Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5125 ATGGGGAGAAGTCCTTGTTGTGTAAAGGAGGGCCTGAATAGAGGTGCTTGGACAGCTCATGAAGACAAAATCCTCACAGATTACATTAAGCTCCATGGTGAAGGAAAATGGAGAAACCTTCCCAAAAAAGCAGGTTTAAGAAGATGTGGAAAAAGTTGTAGACTTAGATGGTTGAATTATCTAAGACCAGATATTAAGAGAGGCAACATATCCTCAGATGAAGAAGATCTTATCATCCGACTTCACAAACTACTCGGAAACAGATGGTCTCTAATAGCAGGAAGACTACCAGGGCGAACAGACAATGAAATCAAGAATTATTGGAACACAAATTTAGGAAAAAAGGTTAAGGATCTCCAACAACAAAAGACCAACAATTCTTCTCCAAAAAATGGAAAGATCACACAGAAACAGAACAATCCTAAGCCAATTATGCCAAACTCACAACATGTTGTCCGTACAAAAGCTACAAAGTGCTCTAAGGTATTATTCATGAACTCACTCCCTAACTCATCACCAATGCATAATTTGCAGAACAAAGCTGAGGCAGAGACAAACACAAAGCCATCAATGCTTGTGGATGGTGGTGTAGCTAGTGATTCAATGAGTAACAACCAAATGGGGCATAGTAATGAATTTTTGTCATTTCCGGATGCAAAAAAAGAACTATCCACAGATTTGCTGGTTGGTTTTAACATGGAGGGTGATGATATTAGCTTATCTGAACTTCTGAACTCAGATTTCTCAACTACGTGCAATTTCGATTACAATGAGCTATTATCGCCTTGTTCGGATCAGACTCCTATGTTCTATGATGAGATTCTCAAGAATTGGACGCAATGTAACTTTGCTGATGAGACAAATGTGCGTAACAACCTTCATCCTTTCACTTCTTTTCTCGAATCCAGTGAGGAAGTACTAGGAGAATGA 930 0.3903 MGRSPCCVKEGLNRGAWTAHEDKILTDYIKLHGEGKWRNLPKKAGLRRCGKSCRLRWLNYLRPDIKRGNISSDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDLQQQKTNNSSPKNGKITQKQNNPKPIMPNSQHVVRTKATKCSKVLFMNSLPNSSPMHNLQNKAEAETNTKPSMLVDGGVASDSMSNNQMGHSNEFLSFPDAKKELSTDLLVGFNMEGDDISLSELLNSDFSTTCNFDYNELLSPCSDQTPMFYDEILKNWTQCNFADETNVRNNLHPFTSFLESSEEVLGE* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5125 309 CDD SANT 16 61 IPR001005 -
Mal5g5125 309 Gene3D - 70 144 - -
Mal5g5125 309 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mal5g5125 309 MobiDBLite consensus disorder prediction 115 148 - -
Mal5g5125 309 PANTHER TRANSCRIPTION FACTOR TT2 1 261 - -
Mal5g5125 309 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 261 - -
Mal5g5125 309 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Mal5g5125 309 CDD SANT 71 112 IPR001005 -
Mal5g5125 309 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mal5g5125 309 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mal5g5125 309 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mal5g5125 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mal5g5125 309 SMART sant 66 114 IPR001005 -
Mal5g5125 309 SMART sant 13 63 IPR001005 -
Mal5g5125 309 Gene3D - 14 66 - -
Mal5g5125 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5125 Mal-Chr5 125065105 125066353 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5125 1 172 MYB Transcription Factor Family AT4G38620 54.598 4.75e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal5g5125 Myb_DNA-binding 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5125 K09422 - gmx:100802704 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5125 5 125065105 125066353 Mal5g5125 5 125065105 125066353 ECH