Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5094 ATGTTGCCACAGAAGTTTAGGCAAAATCCAATGATGCAACAACACTCTCTCTACCAACACCCAGCTCTTATTACTCCTCCACAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCAAGTACATGCCGCAGTGTTTATGTCGGCAATATTCATCCTCAGGTTTCAGAACCCCTACTTCAAGAGCTGTTTTCAAGTGCTGGCGCCCTTGAAGGGTGCAAGCTGATTCGGAAAGAGAAGTCATCATATGGCTTTGTGGACTACTTTGATCGCAGTTCAGCTGCAATTGCTATTGTAACTCTCAATGGGAGGAACATTTTTGGACAGTCAATCAAAGTTAACTGGGCTTATGCTCGTGGTCAGAGAGAAGACACATCAGGGCACTATCATATTTTTGTTGGTGACCTTAGTCCTGAGGTTACAGATGCAACTCTGTATGCTTGCTTCTCCGCGTATTCTAGTTGCTCAGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGATCCAGGGGATTTGGATTTGTTTCTTTTCGAAATCAGCAGGAAGCCCAAAGTGCCATAAACGATTTAACTGGTAAATGGCTTGGAAGTAGACAGATCCGTTGTAATTGGGCCACAAAAGGAGCTAATACCAATGGTGAAAATCAGAGTTCAGAGTTCAAAAGTGTCGTGGAGTTAACTAATGGAACATCTGAAGAAGCGCAGGAAATGACCAGTGATGACGGTCCTGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCCGAGGTTACTTCTGTTGATCTCCATCATCATTTTCATGCCCTCGGTGTTGGAACTATTGAAGATATTAGGGTGCAGCGAGACAAAGGTTTTGGGTTTGTGAGATACAGTACCCATGGTGAAGCAGCTCTTGCTATACAGATGGGTAATGCTCGGTTTCTGTTTGGCAAGCCTATCAAGTGTTCATGGGGTAGCAAGCCTACTCCTCCAGGAACAACATCTACTCCTCTACCCCCACCAGCTTCTACGCATGTACCAGTGCCAGGGTTTTCACCTGCCGGTCTTGCAGCGTATGAACGCCAGCTGGTTTTGAGCAAAATGAATGGTGCACACGCCCTTCTGCAACAGCAGAATCAGCATGCCCTAAAGCAGGCAGCCATGGGAATGGGTGCTCTTGGGGCTGGGTATGGCGGAGGATTCCCTAATGGTGCCACCACCCAGCACCTAATGTACTACCAGTAA 1245 0.4659 MLPQKFRQNPMMQQHSLYQHPALITPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSSYGFVDYFDRSSAAIAIVTLNGRNIFGQSIKVNWAYARGQREDTSGHYHIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWATKGANTNGENQSSEFKSVVELTNGTSEEAQEMTSDDGPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGTIEDIRVQRDKGFGFVRYSTHGEAALAIQMGNARFLFGKPIKCSWGSKPTPPGTTSTPLPPPASTHVPVPGFSPAGLAAYERQLVLSKMNGAHALLQQQNQHALKQAAMGMGALGAGYGGGFPNGATTQHLMYYQ* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5094 414 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 3 410 - -
Mal5g5094 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 327 IPR000504 GO:0003723
Mal5g5094 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
Mal5g5094 414 CDD RRM3_TIA1_like 253 327 - -
Mal5g5094 414 CDD RRM1_TIA1_like 49 119 - -
Mal5g5094 414 CDD RRM2_PUB1 133 207 - -
Mal5g5094 414 Gene3D - 230 331 IPR012677 -
Mal5g5094 414 PANTHER NUCLEOLYSIN TIAR-LIKE PROTEIN 3 410 - -
Mal5g5094 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 255 321 IPR000504 GO:0003723
Mal5g5094 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 115 IPR000504 GO:0003723
Mal5g5094 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 204 IPR000504 GO:0003723
Mal5g5094 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 121 IPR000504 GO:0003723
Mal5g5094 414 SMART rrm1_1 48 117 IPR000504 GO:0003723
Mal5g5094 414 SMART rrm1_1 254 323 IPR000504 GO:0003723
Mal5g5094 414 SMART rrm1_1 133 206 IPR000504 GO:0003723
Mal5g5094 414 Gene3D - 130 225 IPR012677 -
Mal5g5094 414 Gene3D - 3 129 IPR012677 -
Mal5g5094 414 SUPERFAMILY RNA-binding domain, RBD 36 125 IPR035979 GO:0003676
Mal5g5094 414 SUPERFAMILY RNA-binding domain, RBD 245 332 IPR035979 GO:0003676
Mal5g5094 414 SUPERFAMILY RNA-binding domain, RBD 128 215 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5094 Mal-Chr5 124692652 124697572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5094 48 327 Eukaryotic Initiation Factors Gene Family AT2G23350 30.584 1.32e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5094 K13201 - gmx:100813736 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5094 5 124692652 124697572 Mal5g5094 5 124692652 124697572 ECH