Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5090 ATGAAGGCTCCAAACAATGGTTACATGCCTAATTCTGGAGAAGGGGAAAGGAAGACAATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCTTTGGTTTCTTTGCCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGTGAGCAAGTTGCGGCTTCCATGCAAAAGCAGACCGACTTCATACCCAGTTACCCTAACCTTCCGTCCAAGTTGATTTGCATGCTTCACAATGTTGCCCTGCATGCTGATCCTGAAACTGATGAGGTCTATGCACAGATGACCCTTCAACCTGTAAACAAATATGACAAGGAAGCAATACTGGCATCAGACTTTGGTCTCAAACAAAACCGTCAACCTACCGAATTCTTTTGCAAAACTCTAACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTTCCTCGTAGAGCAGCTGAGAAAATATTCCCACCTTTGGATTTTTCAATGCAACCTCCCGCTCAGGAGCTTGTTGCTAAAGATTTGCATGACAATACGTGGGCATTTAGACATATTTATAGAGGACAACCAAAGAGGCATTTGTTGACTACTGGTTGGAGTGTTTTTATCAGCACAAAGAGACTTTTTGCTGGAGATTCTGTTCTTTTTATTAGAGATGAAAAGCAGCAACTTCTTTTAGGTTTGAGGCGCGCTAATAGACAGCAGCCAGCGCTTTCTTCATCAGTAATATCGAGTGACAGTATGCATATTGGCATTTTAGCTGCTGCAGCTCATGCTGCTGCAAATAACAGTCCATTTACTATATATTACAATCCAAGGGCCAGCCCCTCCGAATTTGTTATTCCATTGGCCAAGTATAACAAAGCCATGTACACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACAGATGAGTCTGGAGTACGTAGATATATGGGTACAGTTACTGGAATTAGTGACTTGGATCCTGTCCGATGGAAAAATTCACAATGGCGCAATCTTCAGGTTGGATGGGATGAATCGACAGCTGGTGAACGCCCAAGCAGAGTTTCAATTTGGGATATTGAACCAGTAGTGACTCCTTTCTATATTTGTCCACCTCCATTTTTCAGGCAAAACTTCCCCGGTCACCCTGGAATGCCAAGTGATGACGGGTCCGATGTAGAAAATTCTTTCAAGAGAGCTATGCCCTGGCTTGGAGATGACTTTGGCATGAAGGATGCCTCAAGTTCAGGCTTCCCTGGATTGAGTTTAGTGCAGTGGATGAGCATGCAGCAGAAAAATCAGTTTTCAGGTGCTCAATCAGGATGTTTCCCATCCATGCTCTCGTCTAATACTCTGCATAGTAATCTTAGCACCGACGACCCATCCAAATTATTAAGTTTCCAAGCTCCAGTCCTCTCTGCGCCAAATCTTCAAATTAACAAACCTAATGTACCAAATCAAATCAACCAATTGCAACAGTCCTCAACATCATGGCCTCAGCAACAACAACAACAGTTACAGCAGCAGCAACAACAACAACAACAGTTACAACAACAGCAGCTGCAGTCATTGTCACAAATACCAATGAACCAGTTCCAGCAGCAGAGGCAACAGCAGCTGCCTGAATCACAAAACCTGACACTGCTACAGCAACAAATGACTCAGCAGCTAGGACAGCAGCCACAGAAACAGCCACAGTCATCTCAACACGCTATTATGAATAATGGTGTAGTTGCGTCTAACCATATTACAAATCAGTTTGCACAGCAGCAACCACTAGCTTACGCTCAGCTTCAGCAACAACAACAAATGCTCCCGGGGGGAAGTATCCCACTCCAGCAAAGTATCCAATCTGCCAGTAAGAATACATACCCACTAACATCCCTACCACATGACTCACAATTTCATCAACAGATAGACCAGCAAGCAAATCTCTTACAGAGGCAGCAGCAACAGACACAATTACAACAATCTTCACTGCAGGTGTTGCAACAAAGCCAGCTACAGAGGGTGCCACCAAATCTTCCAGTGACTCAAATGTCTCAACAAAACACCTCGGAGCAACAACTGCAGCTACAATTTCTGCAAAAATGGCAGCAGCAGCAGCAGCAACAACAACTTTTTTCAACGTCTAGCCCACTTTTGCATTCTCAGCTTCTACAGCAACAAAATAATCACCAACAAAACCAGCAATTGTCACAGCTTCCTATATCCCAACATCATAATCAACAGCTTGGCAATAATGCATTTTCAACGGAGAAGCTTCACAACAGCAACAATCTGTCTTCTTCATCTCTTATGCAATCACAACAGCTTTCTGTGAATCAAACCCGGAATGCGCAGAAGCCACTCACAATTACTAGAGTTCCCTCTACACTTACAGATGGAGAGGCTCCATCATGTTCAACATCGCCATCTACTAATAACTGCCAGAAATCTCAACCAAACCTCCTGAAAAGAAATCAACAAGTACCAACTACAATAGTGGAGCCCGCCAGTAATCTGATACAGGACCTTCAGAATAAGTCTGACATGCATGTCAAACCCGACTTCTCGAATCTAAAAGGATCTGACCAGCTAAAGTATAAGGGCACAACTACTGATCAACTGGAAGCTTCTTCTGGAACATCATACTGTCTGGATCCTGGCAACGTCCAACAGAGTTTGCCACTATCCAACTTCTGCATGGAAGGGGATGTACAATCGAACCCTCGAAACAATCTGCCATTTGACTCTAATCTTGATGGTCTAATGTCTGATACTATGCTTTCAAGGGGTTATGACTCTCAAAAAGATCTTCAAAATATGTTGTCTAATTATGGCGGTGCTCCAAGAGACATTGAAACTGAGCTGTCCACTGCTGACATCAGCTCACAGTCATTTGGATTGCCAGACATGTCTTTTAAGCCTGGTTGTTCAAATGATATTGGCATTAATGATACTTCTGGGGTTTTGAACAATGGCTTGCGGGCAAACCAAACTCAACGAATGCGAACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGACGTCACCCGTTACAAGGGATATGATGAACTTCGGTATGATTTAGCACGAATGTTTGGGATTGAAGGGCAACTAGAAGATCCTCAAAGGACTGACTGGAAGTTAGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGATCCTTGGGAGGAATTTGTAAGTTGTGTTCAGAGTGTAAAGATATTGTCATCTGCTGAGGTGCAGCAAATGAGCTTGGATGGGGATTTAGGTAATGTTACAATCCCAAATCAAGCATCCAGTGGGACAGATAGTGGCAATGCATGGAGGGGACAGTATGATGATAACTCTGCAGCTTCGTTCAATAGGTGA 3360 0.4324 MKAPNNGYMPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAILASDFGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFIRDEKQQLLLGLRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIYYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETDESGVRRYMGTVTGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRQNFPGHPGMPSDDGSDVENSFKRAMPWLGDDFGMKDASSSGFPGLSLVQWMSMQQKNQFSGAQSGCFPSMLSSNTLHSNLSTDDPSKLLSFQAPVLSAPNLQINKPNVPNQINQLQQSSTSWPQQQQQQLQQQQQQQQQLQQQQLQSLSQIPMNQFQQQRQQQLPESQNLTLLQQQMTQQLGQQPQKQPQSSQHAIMNNGVVASNHITNQFAQQQPLAYAQLQQQQQMLPGGSIPLQQSIQSASKNTYPLTSLPHDSQFHQQIDQQANLLQRQQQQTQLQQSSLQVLQQSQLQRVPPNLPVTQMSQQNTSEQQLQLQFLQKWQQQQQQQQLFSTSSPLLHSQLLQQQNNHQQNQQLSQLPISQHHNQQLGNNAFSTEKLHNSNNLSSSSLMQSQQLSVNQTRNAQKPLTITRVPSTLTDGEAPSCSTSPSTNNCQKSQPNLLKRNQQVPTTIVEPASNLIQDLQNKSDMHVKPDFSNLKGSDQLKYKGTTTDQLEASSGTSYCLDPGNVQQSLPLSNFCMEGDVQSNPRNNLPFDSNLDGLMSDTMLSRGYDSQKDLQNMLSNYGGAPRDIETELSTADISSQSFGLPDMSFKPGCSNDIGINDTSGVLNNGLRANQTQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRYDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSVKILSSAEVQQMSLDGDLGNVTIPNQASSGTDSGNAWRGQYDDNSAASFNR* 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5090 1119 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Mal5g5090 1119 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mal5g5090 1119 Gene3D - 987 1081 - -
Mal5g5090 1119 Coils Coil 493 516 - -
Mal5g5090 1119 SMART B3_2 126 228 IPR003340 GO:0003677
Mal5g5090 1119 CDD B3_DNA 125 217 IPR003340 GO:0003677
Mal5g5090 1119 PANTHER AUXIN RESPONSE FACTOR 19 1 1107 - -
Mal5g5090 1119 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Mal5g5090 1119 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1107 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal5g5090 1119 Pfam AUX/IAA family 987 1078 IPR033389 -
Mal5g5090 1119 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Mal5g5090 1119 ProSiteProfiles PB1 domain profile. 992 1076 IPR000270 GO:0005515
Mal5g5090 1119 Gene3D - 289 360 - -
Mal5g5090 1119 MobiDBLite consensus disorder prediction 747 816 - -
Mal5g5090 1119 SUPERFAMILY CAD & PB1 domains 1005 1070 - -
Mal5g5090 1119 Gene3D - 124 227 IPR015300 -
Mal5g5090 1119 MobiDBLite consensus disorder prediction 1088 1119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5090 Mal-Chr5 124650171 124655894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5090 1 488 B3 DNA Binding Superfamily AT1G19220 82.172 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mal5g5090 AUX_IAA 3.7e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5090 K14486 - gmx:100816054 1600.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5090 5 124650171 124655894 Mal5g5090 5 124650171 124655894 ECH
Mal5g5090 5 124650171 124655894 Mal4g2899 4 84021742 84028942 PCT