Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5048 ATGACTACCTCTAATAGTATCAATAATGTTGACATTAACAGCATCAGCATCAGTGATGAAGGGTCAGTGAAGCATTTCTCTGCCAACTGGCCATTGTCAACATCTGGACTGACCCCTGTTACAACTCAGTTTGCCATCCTCTACAATGGAAGTATGTGTATGTATGATGGAATTCCTGCAGAAAAGGTGCATGAGATAATGATGATGGCTGCTGCTAATGCCAAGTCTTCTGAAATGAAGAGTGGAATTCCATTCACTTCACTCTTTTCCAGTACTACCCCTTCTTCTCCACAAGGAACCTCTGACAATTTGGCTTCTCCCCCTTCAGTCTGTTTTCCTGCTGCTGAGAAGAATTCCATTTGCAGGATGCAAGAATTTCCATTACCATTAGCACGCAGACAGTCACTTGAAAGGTTTCTTGAGAAGAGAAGAATCAGGGTACGTAGCAAGGCACCTTATACATCTTCATCATCAAAAGCAGCTAACAACACTGAGAACAATTTCAGCCCAGTTATGGTGCCACTTGAGGGCAAATAG 537 0.4283 MTTSNSINNVDINSISISDEGSVKHFSANWPLSTSGLTPVTTQFAILYNGSMCMYDGIPAEKVHEIMMMAAANAKSSEMKSGIPFTSLFSSTTPSSPQGTSDNLASPPSVCFPAAEKNSICRMQEFPLPLARRQSLERFLEKRRIRVRSKAPYTSSSSKAANNTENNFSPVMVPLEGK* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5048 178 PANTHER DIVERGENT CCT MOTIF PROTEIN 13 169 - -
Mal5g5048 178 Pfam Jas motif 129 153 IPR018467 -
Mal5g5048 178 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 13 169 IPR040390 -
Mal5g5048 178 SMART tify_2 37 72 IPR010399 -
Mal5g5048 178 MobiDBLite consensus disorder prediction 150 170 - -
Mal5g5048 178 Pfam tify domain 41 71 IPR010399 -
Mal5g5048 178 ProSiteProfiles Tify domain profile. 37 72 IPR010399 -
Mal5g5048 178 MobiDBLite consensus disorder prediction 147 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5048 Mal-Chr5 124142629 124144959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5048 43 169 Tify Gene Family AT5G20900 39.370 4.18e-19 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Mal5g5048 tify 5.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5048 K13464 - gmx:100306655 140.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5048 5 124142629 124144959 Mal4g2823 4 81137348 81138232 PCT