Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5035 ATGGAAACATTAGAACAAATTGATGCTCATCAAACTCAATCATCTTCATCTTCATCATCTTCAATAGATAGTAACAACTATCCTTCATCACTGTGCTTCTCAAGTGTGTGCAGAAATAGTAGTAGCAGTAGCAGCAGAAACAGAACTGATTTGAGCACTGACCTCAAACTTGGTCTTAGTATCTCTCCTTCTTCTCAATCTCAATTGCCATTCAATTCAACAACACCAAGGGAGGAAACATTTGATTGGCCACCAATTAACAAGTCCATATTGAGAAGCACCTTGGGTGAGAAACAAAATCATATTCATAACCAAAGATCTTCTTTATTTGTCAAAGTTTATATGGAAGGAATCCCAATTGGTAGAAAATTAAATCTGTTGGAACATGATAGCTATGAAGGACTTATTAAAGCTCTTTGTCATATGTTTAGGACCATCATTCTCTGTCCTAACTCTCAACCACTTAATTCTTGGAATTTTCATGTGCTAACTTATGAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATATACCTTGGGAGATGTTTTTGTCCAGTGTGAAGAGGCTGAGGATCACAAGAGCTAACAGCTGCTAG 597 0.3769 METLEQIDAHQTQSSSSSSSSIDSNNYPSSLCFSSVCRNSSSSSSRNRTDLSTDLKLGLSISPSSQSQLPFNSTTPREETFDWPPINKSILRSTLGEKQNHIHNQRSSLFVKVYMEGIPIGRKLNLLEHDSYEGLIKALCHMFRTIILCPNSQPLNSWNFHVLTYEDQEGDWMMVGDIPWEMFLSSVKRLRITRANSC* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5035 198 MobiDBLite consensus disorder prediction 1 24 - -
Mal5g5035 198 Pfam AUX/IAA family 41 195 IPR033389 -
Mal5g5035 198 PANTHER AUXIN-RESPONSIVE PROTEIN IAA31 16 198 - -
Mal5g5035 198 SUPERFAMILY CAD & PB1 domains 104 193 - -
Mal5g5035 198 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 198 IPR003311 GO:0005634|GO:0006355
Mal5g5035 198 ProSiteProfiles PB1 domain profile. 108 197 IPR000270 GO:0005515
Mal5g5035 198 Gene3D - 102 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5035 Mal-Chr5 123977212 123978194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5035 111 192 B3 DNA Binding Superfamily AT2G46530 37.805 3.69e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mal5g5035 AUX_IAA 8.2e-34 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5035 5 123977212 123978194 Mal5g5035 5 123977212 123978194 ECH