Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g5026 ATGGAACCAGAAGACTGGGATTTGAGCGGTGAAGACTTCGATTCTCTTGAAAGAGACGCTTTCCAGAAAATCGCTCAACTCCGCTCTCAACAACCTCCTTCTTCTTCTTTTCAACAACCCCATACTCATTTTGCAAACCCTCTTCCCGCTTCACGTCCTCAAAGAGTTGATGCTTCGTCGCAAGGACATAGAGCACTTCCCACGTCATTGAAATCAACGACAAACAACACTAACAACGGTGAACATTCTAAAGAATTGACAAAAGCTTCCGTCAAATTTTTTCTCCATTCAAGTGGAAATGTTGCAGCAAAGTTTCAATATGACCAGGTAATAGTTGCTGCTTTTAGAAAAATCCCTAAATCTTCTTGGAATGCCAAAGAGCGGTTATGGATGTTCCCTCTATCTTCTTTGTCAGAAGCAGAAAAGGTTCTTAGAGAAATATCTGGTTATAATGTTCAGGTGGAGAACTTAGATCCCTTGGTGCAACGTGCTATTACTGCTGCCACTTCTGTTCCTGATCTTCGAGATCGATATGATAAGATCCCTAGCTATGTTGAATCAAAGCTTTTGCCATTTCAGCGAGACGGTATAAGATTTATATTGCAGCATGGATGTCGTGCTTTTTTAGCAGATGAAATGGGACTGGGGAAAACGTTGCAGGCCATTGCTGTAGCTGCATGCGTTCAGGATTCGTGGCCTGTTCTCATACTTGCACCATCTGCATTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATCCCTTCATCAGATATACTTGTTGTCTTATCTCAAAGTGGTGGATCAAATAGAGGTGGTTTCAATATAGTATCTTCAAGTGCCAAAAGCAAAATTCATCTGGATGGGCTATTCAACATTATCTCCTATGATTTGGTGCCAAAGATGCAAAGTACACTTATGGGGTCTGACTTCAAGGTTGTAATTGCTGATGAGTCGCACTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCGGTTATAAAGAAAGCTCAATATGCAATATTGCTTAGTGGAACTCCTGCTTTATCCCGACCAATTGAATTATTCAAACAGCTGGAAGCTTTGTATCCTGACGTGTATAAGAATGTTCATGAATATGGTAACCGGTATTGCAAGGGTGGAATTTTTGGACTTTATCAAGGGGCAAGTAATCACGAGGAATTGCACAATTTGATGAAGGCAACAGCGATGATTCGGAGGCTTAAAAAGGATGTTCTTTCTGAACTTCCTGTAAAGCGTAGGCAACAAGTCTTCCTAGACTTGGCCGACAAGGACATGAAGCAAATTAATGCTCTATTTCGTGAGTTGGAGAGGGTAAAAGCCAAAATTAAGGCAGCTAACTCGCAAGAGGAGGCTGAATCACTCAAATTTTCTCAAAAGAATATCATTAACAAGATTTATACTGATTCTGCGGAAGCCAAGATTCCCGCTGTTCTTGATTATCTTGGAACTGTAATTGAGGCAGGCTGCAAGTTTCTTATATTTGCACACCATCTACCAATGATTGATGCGATACACGAGTTTCTTCTTAAAAAAAAGGTTGGTTGCATCCGGATTGATGGAGGTACACCTTCTGGATCAAGGCAACAATTAGTTACAGAGTTTCAGGAAAAAGATGCTATCAAGGCAGCAGTGCTATCTATCAAAGCTGGAGGTGTCGGGTTAACATTGACTGCTGCCAGCACAGTCATCTTTGCAGAATTGTCTTGGACTCCTGGTGATCTAATTCAGGCCGAAGACCGTGTTCATAGAATTGGCCAGGTGTCTTCGGTAAATATATACTACTTGCTTGCAAATGACACAGTTGATGATATCATATGGGACGTAGTGCAAAACAAACTGGAGAATTTGGGGCAGATGCTTGATGGGCATGAGAACACCTTAAAGGTCTCAGATGATCAACCGCCATTGAGGAGCCCTGCAAAGCAGAAAACTCTTGACCATTTTGTCAGATGTGACAACAGCACAAGTGGATTGGAACATCAGTCAACCCCCAAACGTCCTCGATACTGA 2049 0.4187 MEPEDWDLSGEDFDSLERDAFQKIAQLRSQQPPSSSFQQPHTHFANPLPASRPQRVDASSQGHRALPTSLKSTTNNTNNGEHSKELTKASVKFFLHSSGNVAAKFQYDQVIVAAFRKIPKSSWNAKERLWMFPLSSLSEAEKVLREISGYNVQVENLDPLVQRAITAATSVPDLRDRYDKIPSYVESKLLPFQRDGIRFILQHGCRAFLADEMGLGKTLQAIAVAACVQDSWPVLILAPSALRLQWASMIQQWLNIPSSDILVVLSQSGGSNRGGFNIVSSSAKSKIHLDGLFNIISYDLVPKMQSTLMGSDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGIFGLYQGASNHEELHNLMKATAMIRRLKKDVLSELPVKRRQQVFLDLADKDMKQINALFRELERVKAKIKAANSQEEAESLKFSQKNIINKIYTDSAEAKIPAVLDYLGTVIEAGCKFLIFAHHLPMIDAIHEFLLKKKVGCIRIDGGTPSGSRQQLVTEFQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQVSSVNIYYLLANDTVDDIIWDVVQNKLENLGQMLDGHENTLKVSDDQPPLRSPAKQKTLDHFVRCDNSTSGLEHQSTPKRPRY* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g5026 682 MobiDBLite consensus disorder prediction 27 45 - -
Mal5g5026 682 MobiDBLite consensus disorder prediction 53 82 - -
Mal5g5026 682 Gene3D - 451 675 IPR027417 -
Mal5g5026 682 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 311 643 IPR027417 -
Mal5g5026 682 MobiDBLite consensus disorder prediction 27 82 - -
Mal5g5026 682 SMART ultradead3 185 378 IPR014001 -
Mal5g5026 682 CDD SF2_C_SNF 485 609 - -
Mal5g5026 682 Pfam SNF2-related domain 203 464 IPR000330 GO:0005524|GO:0140658
Mal5g5026 682 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 490 641 IPR001650 -
Mal5g5026 682 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 198 370 IPR014001 -
Mal5g5026 682 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 412 IPR027417 -
Mal5g5026 682 ProSiteProfiles HARP domain profile. 83 159 IPR010003 -
Mal5g5026 682 CDD DEXHc_HARP_SMARCAL1 189 412 - -
Mal5g5026 682 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 4 665 IPR030101 GO:0006281|GO:0031297|GO:0036310
Mal5g5026 682 Coils Coil 431 465 - -
Mal5g5026 682 Pfam Helicase conserved C-terminal domain 491 598 IPR001650 -
Mal5g5026 682 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 665 - -
Mal5g5026 682 Gene3D - 161 437 IPR038718 -
Mal5g5026 682 SMART helicmild6 515 598 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g5026 Mal-Chr5 123856524 123867079 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g5026 469 618 RAD5 or RAD16-like Gene Family AT1G05120 30.519 3.72e-17 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal5g5026 SNF2_N 2.4e-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g5026 K14440 - gmx:100797654 1108.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g5026 5 123856524 123867079 Mal5g5026 5 123856524 123867079 ECH
Mal5g5026 5 123856524 123867079 Mal7g3321 7 97895507 97896418 PCT