Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4980 ATGGATGTTAAAGGAAGAGGAAGCAACAACAAAAACCTCAAGAGTAGTAGTGATGAGGATGAGATGGACCTTAGAAGAGGTCCATGGACCGTGGATGAGGACTTAACCCTCATGAATTACATTGCTACTCATGGTGAAGGTCGTTGGAATACCCTCGCCAACTCTGCTGGTCTCAAACGAACGGGCAAGAGTTGCAGATTGAGATGGCTTAATTATCTCCGTCCCGATGTTAGACGTGGAAACATCACACTCGAAGAACAACTTTTGATTCTTGAGCTCCATACTCGTTGGGGTAACCGATGGTCGAAAATAGCTCAATATTTACCGGGAAGAACCGACAACGAAATAAAAAATTATTGGAGAACTCGTGTACAAAAGCTTGCCAAACAACTCAAATGCGACGTGAATAGCAAGCAATTCAAGGACACCATGCGCTACCTTTGGATGCCAAGGTTAGTCGAACGTATTCAAGCCGCAGCTGCCGCTAGTACCACCACCACCACCACAGCAACCGCCGCCAATACTTCATACAATAATAACAACTGCAAAATAATGGGTTCAACTCCAGCAATTATAAACAATGAATTTGTGAGTTCACAACCATATATGACACAAAGTTATACCCTAGAGAACAGCAACACAACTGCATCATCAGATTCATTTGAGAATAAGGTGTCAACAATATCGGATTTGGGTGATAATAATAATAATAATAGTTATTATACAAGTGTGAGTAATAAGGATAACCCTAATGCTGCTAGTTCAAATTATTATCAACCTTCTCATCAACTTAGCTTCTCGGATTGCATCACAAGCCCGTCTGGATTATTTTCTCAAGGATTAATGGATTTCCAATCCATGGAGCCAAACACACCGTGGATGCAAAGTGGGGACTCATCCGACATTTTTTGGAATGCTGAAAATATGTTGTTTTTACAGCAACAACTCATGAACGACACAATGTAA 966 0.411 MDVKGRGSNNKNLKSSSDEDEMDLRRGPWTVDEDLTLMNYIATHGEGRWNTLANSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHTRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKLAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAAAAASTTTTTTATAANTSYNNNNCKIMGSTPAIINNEFVSSQPYMTQSYTLENSNTTASSDSFENKVSTISDLGDNNNNNSYYTSVSNKDNPNAASSNYYQPSHQLSFSDCITSPSGLFSQGLMDFQSMEPNTPWMQSGDSSDIFWNAENMLFLQQQLMNDTM* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4980 321 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Mal5g4980 321 Pfam Myb-like DNA-binding domain 79 122 IPR001005 -
Mal5g4980 321 SUPERFAMILY Homeodomain-like 23 120 IPR009057 -
Mal5g4980 321 CDD SANT 28 73 IPR001005 -
Mal5g4980 321 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Mal5g4980 321 PANTHER MYB TRANSCRIPTION FACTOR 1 316 - -
Mal5g4980 321 SMART sant 78 126 IPR001005 -
Mal5g4980 321 SMART sant 25 75 IPR001005 -
Mal5g4980 321 CDD SANT 99 122 IPR001005 -
Mal5g4980 321 Gene3D - 26 78 - -
Mal5g4980 321 MobiDBLite consensus disorder prediction 1 24 - -
Mal5g4980 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Mal5g4980 321 Coils Coil 313 321 - -
Mal5g4980 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Mal5g4980 321 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Mal5g4980 321 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 316 IPR044676 GO:0003700|GO:0006355|GO:0043565
Mal5g4980 321 Gene3D - 83 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4980 Mal-Chr5 123308875 123310616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4980 1 305 MYB Transcription Factor Family AT3G06490 53.943 1.24e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal5g4980 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4980 K09422 - gmx:100791349 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4980 5 123308875 123310616 Mal5g4980 5 123308875 123310616 ECH