LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g4965	ATGAATGTTATTCTGTTTGTGCTCCAATTCCTATGTTTCATTCTTTTAACCACTTCTTCCTTGTTCATTAAAGCATCTGAAATAAATGTTACTAAAAGTTATGAAACTGATAGAATAATTGATCTACCAGGACAACCTTCAACTCCATCGGTTTCACACTTTTCTGGTTACATCACTGTCAATGAAGAACATGGCAGGGCCCTTTTCTATTGGTTCTTTGAAGCTCAGTCTGAACCCTCCAATAAACCTCTCCTTCTATGGCTCAATGGAGGACCTGGATGCTCTTCAATTGGATATGGTGCTGTTGTTGAGATAGGACCTCTTCTAGTCAACAAAAATGGTGAAGGACTATTATTCAACCCATACTCTTGGAATCAAGAAGCAAATTTGTTATTTGTGGAGTCCCCTGTTGGAGTTGGTTTTTCTTACACAAATACTTCTTCTGATCTTACCATTTTAGAGGATCATTTTGTGGCTGAGGATGCTTACAGTTTCTTGGTGAATTGGCTACAAAGATATCCACAGTTTAAATCCAGGGACTTTTTCATATCAGGAGAAAGCTATGCTGGTCACTATATCCCTCAGCTTGCAGAGTTAATCTTTGACAGAAACAAAGAAACAAACAAGCATCCCTTTATTAACCTTAAAGGTTTTATTGTTGGAAATCCAGAAACTGAAGATTACTATGACTATAAAGGCCTTCTAGAATATGCATGGAGTCATGCAGTTATATCAGATCAGCAATATGACAAAGCAAAACAAGTTTGTGATTTCAAACAATCTCAATGGTCTAATGAGTGCAATCAAGTCATGAATGAACTCTTCCATGATTACTCAGAAATTGACATATACAACATTTATGCACCAGCATGTCGTTCAAATAGTACATCCTCAGTAACAAATAATGCCCCTGAATCATTTTCCAAGGTGAAAAATGATTATAAATTAAAGAGGATGAGAATTTTTGGAGGATATGATCCTTGTTATTCAGCATATGCAGAAGAATTTTTCAATAGGGTAGATGTTCAATCATCTTTTCATGCAAATACTATAAGAGAAAACAATAACATAGTAGCATGGAAGGTTTGCAATGATTCCATATTGAGGACTTACAACTTCTCTGTTTTTTCTGTCCTGCCCATCTACACCAAACTCATTAAGGGTGGCCTTAAGATATGGATTTACAGTGGAGATGCAGATGGCAGACTACCTGTGATAGGAACACGATATTGTGTTGAGGCTTTAGGACTACCTCTAAAGTCTACTTGGAGATCTTGGTACCATAATAATCAGGTTGGAGGAAGGATAGTGGAGTATGAAGGGTTGACATATGTGACAGTGAGAGGAGCTGGTCACTTAGTTCCTCTCAACAAACCAACTGAGGCTCTCTCTCTTATTCACTCTTTCCTAACTGGAGACCATCTCCCTACTACACGTCCATGA	1443	0.3763	MNVILFVLQFLCFILLTTSSLFIKASEINVTKSYETDRIIDLPGQPSTPSVSHFSGYITVNEEHGRALFYWFFEAQSEPSNKPLLLWLNGGPGCSSIGYGAVVEIGPLLVNKNGEGLLFNPYSWNQEANLLFVESPVGVGFSYTNTSSDLTILEDHFVAEDAYSFLVNWLQRYPQFKSRDFFISGESYAGHYIPQLAELIFDRNKETNKHPFINLKGFIVGNPETEDYYDYKGLLEYAWSHAVISDQQYDKAKQVCDFKQSQWSNECNQVMNELFHDYSEIDIYNIYAPACRSNSTSSVTNNAPESFSKVKNDYKLKRMRIFGGYDPCYSAYAEEFFNRVDVQSSFHANTIRENNNIVAWKVCNDSILRTYNFSVFSVLPIYTKLIKGGLKIWIYSGDADGRLPVIGTRYCVEALGLPLKSTWRSWYHNNQVGGRIVEYEGLTYVTVRGAGHLVPLNKPTEALSLIHSFLTGDHLPTTRP*	481

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g4965	480	ProSitePatterns	Serine carboxypeptidases, serine active site.	183	190	IPR018202	GO:0004185
	Mal5g4965	480	ProSitePatterns	Serine carboxypeptidases, histidine active site.	442	459	IPR033124	GO:0004185
	Mal5g4965	480	Gene3D	alpha/beta hydrolase	31	302	IPR029058	-
	Mal5g4965	480	Gene3D	-	378	472	-	-
	Mal5g4965	480	PRINTS	Carboxypeptidase C serine protease (S10) family signature	133	143	IPR001563	GO:0004185\|GO:0006508
	Mal5g4965	480	PRINTS	Carboxypeptidase C serine protease (S10) family signature	169	194	IPR001563	GO:0004185\|GO:0006508
	Mal5g4965	480	PRINTS	Carboxypeptidase C serine protease (S10) family signature	120	132	IPR001563	GO:0004185\|GO:0006508
	Mal5g4965	480	PRINTS	Carboxypeptidase C serine protease (S10) family signature	442	455	IPR001563	GO:0004185\|GO:0006508
	Mal5g4965	480	PANTHER	SERINE CARBOXYPEPTIDASE-LIKE 26	9	477	-	-
	Mal5g4965	480	Pfam	Serine carboxypeptidase	43	471	IPR001563	GO:0004185\|GO:0006508
	Mal5g4965	480	Gene3D	-	328	367	-	-
	Mal5g4965	480	SUPERFAMILY	alpha/beta-Hydrolases	39	473	IPR029058	-
	Mal5g4965	480	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	9	477	IPR001563	GO:0004185\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g4965	Mal-Chr5	123191772	123195463	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g4965	353	475	Calmodulin-binding Proteins	AT2G22960	30.645	4.28e-14	68.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g4965	K16297		-	gmx:100815141	851.277