Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4955 ATGGCTGGTGTTTCTAGCAGAACTCGTAGCAAGAATGTTCCCTTGTTTCGTAGTGTTTCACTTGGTGGTTCATCGAAGCGTCGAAAGAGTGATGAAGATGATATGTGTTTGGATTTTGGTTCTTGTTCTAAGAAAATGAAGGTAAATAAGGAACCTTTTGTGGTTCCTAAAGGTGTAAAGGTAATTTTCATTGATGAAGATGATTATGGTAATGAAGGTGAAGAAGGAGATGAAGAAAACCCTATTACAATACATTCAGACGAGTATGGTGAAAGTGATGAACAATACTCTATTAGTTCTGATTCTGAATATGATACTGATGTTAAAGATGGAGTAAATAGTGGAGGAAACGGTGAGTTTTCTGATAAAGATAAAAACTTTGTTGATTTGGATGAGAGGGATGAAGAAATAAAGTTTGTTGGTTCTGATGAAAGTGAAGAAAATGAGACTAGTGATGAAGATTTTGAAGTTGATGAGCTGAATTGCATTTCTGACAAGGATGATGAAAGTTCTTCTGGCTCTCCTTATGATGATGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGAAGGAGAAGAAAAAGCTTGGTAGAAGATACTTTAATGTGGTGGAGAAGTTGGCGAGAGAGGTGATGGATGGTGGAATTTCAGAGATGAATAATGAGGAAGTGAAGGATAAAAGTCCTTCTTCTGTAAACAATGATGAAGTGGAGCATTCAGATTATGGCAGTGTAGCAACTTCCACTGCCTTTGAGAAGAAGGATTCTTTTGATTCAATGAAGGGTTCTTCTTCAAACAATGACACATCAGAGAAACAAAAGGCAGAAAGTGTGGAAAATGTCTCTGATGGTGATGGTGATGTAAATGTTGCCAAAGCCAAAGAACGTGATGAAAGTGTTAATCTTTGTGATGATGTTAATGTTGGCAAATCCAAAGTCAAAGCCGAAGACAATGCTAAATCTAATGACAGTGTGAATGTTGCTGGTTCTGATGAAAGAAAGGAACAATATATCAAAGGTTTAGGAGTTGGAGGGGTTTCGTCGGTTCAAACGAAGCAAGAAAAGATGAAGGAACCGGATAAGCAGAAAATGATAGAGAACAATGGAAGGGATTTCAAAGGTAGAGCTAACATCTTCAAAGCGAAAGACAATGCCAAACCTAATGTCAGTGTGAAGGTTGCTGACTGTGATGAAGGAAAAGAACAATATGTCAAAGGTTTAGGTGTTGACGGAGTTTCATCAGTTCAAGCGAAGAAAGAAAAGATGAAGGAATCACATAAACAGAAAATGGTAGAGAACAATGGAAGGGATTACAAAGGTAGAGCTAACATTTGTATTGAGAAGAAGAAGGAATCTATTGATAAGAATGGTTTAAATCAAAGGGTCGAAAGCACACATTATATGCGGAAGGAGTTGCGTTCACTCGAACTCCTTGCTAAATGCTATTCGGAAAGAAAGAATACCATGAAGAATGATTCAACTGTGTTGGAGGTCAACGGCGATGGCATTGATCGGCAAGATACACAGCCCCCTCCAGTTTCTGTGAAGACACTTCAGGAACGGATATGGAGGCTTAAAAAGGTGGAAATAGTTCAAAAGACTAAAGAGGAGGAAGAGGAGGAAGTGTTATGGGCTGAATATGCTACAGCCCTAAGAGAATCAGAAGCTGTATCAAAGATTGGAAATATTGGGACAAATGAAGCTTCAAACATAAAAAACAGAAGTCCATCATCTCGTTGTGAACATGAATACACTTATCTCAACGAAGAGATTGGTTTGTATTGCAGATTCTGTGATGTGGTTGTTACTGAGATCAAAGATATCTCACCACTAGTGATCGATAGATGTCCCGGTGAAGGCTCAGGAAAAAAGGCATCATTTGATGGAGTAAACGTTTCACCGCTTGATGGATCTCAATTCAATGTTTCTAATAATGATTCAGAGACTAATTTATCTCGCAATCAGGGAACAGTTTGGGACCTGATTCCAGATATGAAACAAACCTTATATCCTCACCAACAAGAAGGCTTTGAATTCATTTGGAAAAATTTGGCAGGAAACATCGAGCTTCAAAAGTTAAAGAATGCCGACCCTTGCAGCGAAGGTGGCTGTATTATTTCTCATGCTCCTGGAACCGGGAAGACAAGGCTGACCATAGTGTTTCTCAAGGCCTATTTGAAAGCGTTTCCAAAATGCTTGCCGATTATTGTCGCTCCTGCTGGTATACTAATAACTTGGGAAGACGAATTCAAGAAATGGGACATCGGAGTTCCATTTCACAATTTAAGCAATCCCGAGTTATCTGGTAAAGAGCATGCTGATGCGGTTGAAACATTCAATAGGTCTAATACACAGCATGGTATTGATGAAACGCGGACGGCGAAACTGATTTCGTGGTTCAAAGAAACAAGCATTCTTGGAATCAGCTACAATTTGTTTGGAAAAAAATGTAAAGATAAGAAAAAGCATGAAAGTGTGGAGAGAAAAGGAAACTGTGATATGCGAAAGATTCTACTTGAAGCTCCTGGTTTGTTAGTTCTAGATGAAGGACACACACCAAGAAATCAAAGAAGTCATATTTGGAAGGTGTTGTCGAAGATTCAAACGCAGAAGCGTATCATCCTTTCCGGAACTCCATTCCAGAACAATTTCTGGGAGCTTTACAGCACCTTAAGCTTAGTGAAGCCTTCTTTTCCTAACACGATACCGCCTGAGTTAAAAACTTTTTGCCAGAATCAAGGACTTCAATCATCTAAAAAATTGAGTTGGGAACCTGTTTTGGGCAACACAAAAAGAGATCCTTCTGATGATAAGATCAAGAAGTTGAAATTGCTAATGGATCCCTTTGTTCATGTGCACAAAGGTGCAATCCTTGAAAATAAGCTTCCCGGGTTAAGGGAATGTTTGGTGACTTTGAAGGCAGATAGTTTGCAGAATGAAATTCTGAAGACCATTAAACGTTCGCAGAACACAGTATTTAACTTTGAGCGTAAGATAGCATTGACATCCGTCCATCCATCGCTTTTCCTTGAATGCGCTCTTTCGAAAGAAGAAGAATCTGTTCTCGACAAGGATCAGCTGGAAAAGCTTAGACTGAACCCACATGAAGGTGTCAAAACAAAATTTTTGTTCGAGTTTGTTCGTCTATGTGATGCTTTTCATGAGAAAGTTCTTGTGTTCAGCCAATTTCATGCTCCTTTACAATTAATTAAAGATCAATTAAACTCGGCTTTTAAATGGTCTGAAGGAAAGGAAGTGCTGCTCATGTCTGGCGAGGATCCTCCAAAGGTCAAGCAGTCCCTAATCCATAGCTTCAACGATGCAAATTGCCAAGCGAAGGTTCTACTTGCATCTACAAAAGCTTGTTCCGAGGGAATTAGCTTAGTTGGAGCTTCAAGGGTTGTACTTCTAGATGTTGTATGGAATCCTTCGGTCGAAAGACAGGCTATCAGCCGAGCGTATAGGATTGGACAGAAGAGAGTGGTATACACATACCATCTTCTCGCTGAAGGGACTACTGAGGAAGAAAAATATGGTAAACAGGCCGAAAAGGACCGGTTATCTGAGATTGTTTTTTCAGCGAAAAATGCCGCCAATAATGATGATAAGTCCAAGAGCTGTGCTGTGAACTTTGAAGATAGATTTCTTGATGAGATGACTCGACACGAAAAGCTCAAAGACATTTTTGTTAAGTGCGTGGTATTGAGGAAGGAGCGAGATGTGGTCTGA 3723 0.3967 MAGVSSRTRSKNVPLFRSVSLGGSSKRRKSDEDDMCLDFGSCSKKMKVNKEPFVVPKGVKVIFIDEDDYGNEGEEGDEENPITIHSDEYGESDEQYSISSDSEYDTDVKDGVNSGGNGEFSDKDKNFVDLDERDEEIKFVGSDESEENETSDEDFEVDELNCISDKDDESSSGSPYDDEEEEEEEEEEKEKKKLGRRYFNVVEKLAREVMDGGISEMNNEEVKDKSPSSVNNDEVEHSDYGSVATSTAFEKKDSFDSMKGSSSNNDTSEKQKAESVENVSDGDGDVNVAKAKERDESVNLCDDVNVGKSKVKAEDNAKSNDSVNVAGSDERKEQYIKGLGVGGVSSVQTKQEKMKEPDKQKMIENNGRDFKGRANIFKAKDNAKPNVSVKVADCDEGKEQYVKGLGVDGVSSVQAKKEKMKESHKQKMVENNGRDYKGRANICIEKKKESIDKNGLNQRVESTHYMRKELRSLELLAKCYSERKNTMKNDSTVLEVNGDGIDRQDTQPPPVSVKTLQERIWRLKKVEIVQKTKEEEEEEVLWAEYATALRESEAVSKIGNIGTNEASNIKNRSPSSRCEHEYTYLNEEIGLYCRFCDVVVTEIKDISPLVIDRCPGEGSGKKASFDGVNVSPLDGSQFNVSNNDSETNLSRNQGTVWDLIPDMKQTLYPHQQEGFEFIWKNLAGNIELQKLKNADPCSEGGCIISHAPGTGKTRLTIVFLKAYLKAFPKCLPIIVAPAGILITWEDEFKKWDIGVPFHNLSNPELSGKEHADAVETFNRSNTQHGIDETRTAKLISWFKETSILGISYNLFGKKCKDKKKHESVERKGNCDMRKILLEAPGLLVLDEGHTPRNQRSHIWKVLSKIQTQKRIILSGTPFQNNFWELYSTLSLVKPSFPNTIPPELKTFCQNQGLQSSKKLSWEPVLGNTKRDPSDDKIKKLKLLMDPFVHVHKGAILENKLPGLRECLVTLKADSLQNEILKTIKRSQNTVFNFERKIALTSVHPSLFLECALSKEEESVLDKDQLEKLRLNPHEGVKTKFLFEFVRLCDAFHEKVLVFSQFHAPLQLIKDQLNSAFKWSEGKEVLLMSGEDPPKVKQSLIHSFNDANCQAKVLLASTKACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRIGQKRVVYTYHLLAEGTTEEEKYGKQAEKDRLSEIVFSAKNAANNDDKSKSCAVNFEDRFLDEMTRHEKLKDIFVKCVVLRKERDVV* 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4955 1240 MobiDBLite consensus disorder prediction 146 163 - -
Mal5g4955 1240 MobiDBLite consensus disorder prediction 310 329 - -
Mal5g4955 1240 SMART ultradead3 663 907 IPR014001 -
Mal5g4955 1240 MobiDBLite consensus disorder prediction 233 251 - -
Mal5g4955 1240 MobiDBLite consensus disorder prediction 122 145 - -
Mal5g4955 1240 Gene3D - 637 923 IPR038718 -
Mal5g4955 1240 Gene3D - 961 1235 IPR027417 -
Mal5g4955 1240 Pfam Helicase conserved C-terminal domain 1050 1155 IPR001650 -
Mal5g4955 1240 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 389 1239 - -
Mal5g4955 1240 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 1 381 - -
Mal5g4955 1240 MobiDBLite consensus disorder prediction 217 232 - -
Mal5g4955 1240 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 693 895 IPR014001 -
Mal5g4955 1240 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1043 1196 IPR001650 -
Mal5g4955 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 658 908 IPR027417 -
Mal5g4955 1240 Pfam SNF2-related domain 685 989 IPR000330 GO:0005524|GO:0140658
Mal5g4955 1240 CDD SF2_C_SNF 1037 1166 - -
Mal5g4955 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 840 1199 IPR027417 -
Mal5g4955 1240 MobiDBLite consensus disorder prediction 15 34 - -
Mal5g4955 1240 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 389 1239 IPR044567 GO:0080188
Mal5g4955 1240 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 381 IPR044567 GO:0080188
Mal5g4955 1240 MobiDBLite consensus disorder prediction 66 195 - -
Mal5g4955 1240 MobiDBLite consensus disorder prediction 172 187 - -
Mal5g4955 1240 SMART helicmild6 1066 1155 IPR001650 -
Mal5g4955 1240 MobiDBLite consensus disorder prediction 210 296 - -
Mal5g4955 1240 Coils Coil 177 197 - -
Mal5g4955 1240 MobiDBLite consensus disorder prediction 78 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4955 Mal-Chr5 123098930 123104393 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4955 1053 1185 RAD5 or RAD16-like Gene Family AT5G43530 39.098 2.35e-17 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal5g4955 SNF2_N 6e-21 CL0023