Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4944 ATGAACTACAACCACCGTCGAAGTCCCGGTGGTTTCCGCCCCGCCCCTCTCCATCGCAGCAACTTTGATAGTCCCTCGCGGTGGTCTCCAGGTAGGGTTGGAGGTGGTTTCCGTCCGCCACCTGCCGGAGATGGTTTCAGACCGATGGGCGGTGATGAATTTGGATTCAATCAACCTCCGCCGCCGTTGTCTGGTCAGAAACGTGGGTTTCCTTTCTCTGGACGTGGTGCTTCACCGGATCATTTTGATGGTGGACATTATGCCAAACTTTTTGTTGGGTCTGTTCCCCGAACAGCAACTGAGGAAGATATTCGTCCTTTGTTTGAGGATCACGGGAATGTGATTGAGGTCGCTCTGATCAAAGATAGAAAGACAGGACAGCATCAAGGTTGTTGTTTCATAAAATACGCTACCTCAGAGGAAGCTGATCAGGCAATTAGAGCATTGCACAATCGACATACTCTTCCCGGAGGTGTTGGTCCCATCCAAGTGCGGTATGCTGATGGCGAACGGGAACGCCTTGGTGCAGTTGAGTACAAACTATTTGTGGGCTCTCTGAACAAACAGGCCAGTGTAAAGGAAGTTGAGGAAGTTTTCTCAAAATATGGCCGGATTGAAGATGTTTATCTTATGCGTGATGACCAGAAGCAGAGCCGTGGATGCGGTTTTGTCAAATACTCTCATAGAGATATGGCACTGGCAGCTATTAATGCACTTAATGGAATATATACAATGAGAGGTTGTGATCAACCACTGATTGTCCGGTTCGCTGATCCTAAGAGACCTCGTCAAGGAGATTCCAGGGGTCCTGCATTTGGATCTGCAGGATTTGGTCCTAGATTGGATGCACCAGGCACTAGACTTCCATCAAATAATTCTGATCCTATGGGTGATCATATTCCTCCCCCTAATGCTTGGCGTCCAATCCATCATCCAAATACTGGGACATCCTTCAATGCTGGTTTTCATGGCATGGGGCCTCCATCGATTCCAAGATCTGGCGACATGGCATTGCCTGTAAATGCAGGTGGTCCTATGACTGGCGTGGGAGTTTCTATAGATGGTCGTTTTCAAACTCAGTCTCCGTCAGCAATGCCACAACAGAATTTCAACCAACCTCCACTGCAAATTCCACCGGTCAATCAACAAATACCTCCATCACAGAAACCTATTCAATCATCTCAGGAGTTTCCACCTTCACACCAGTTATATCCTCAAGCTCCGATTCCATATCCTCAAACATCCACACATCCATCTCTCAGGCAGCATGGTCAGCCCCAACCTCTCTCTGCTGGTCCACAGGGACTGGGCATAAATGCACAGTTTTCAGTTTCTCAGCCTCAAACTCAGCAGAGTGTATTGTCTGCTACATTTCCTCAGACCTCTCTTGATACCAGCATGCAATCTAATAAAGCATTGACTACTCCAAGTCAACAGCAAATTCCTCCCTCTATGCAGCAGCAGCAGCAGCATTCACTTCAACCTCTTCCGCAATCCCCTTCTCAGTTAGCCCAGTTGTTGTCACAACAAACACAGACTTTACAAGCAAGTTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAGCAATTACAGATGATGCAACCATCCAGTCAAGCATTGCCATTGCAGCATCATGCAGAAGCTACTAAAACACAGTCTCAATGGGGTGGGACTGTATCACATGCAGCGACTGGCACTCATGTAGCTGCACCTGCTGCAGGTGTTCCTTCATCAACACCTACTACTTCTGTACAACCAATAAGCCAGAACACAACTCTTGGAAAATGTAATTGGACAGAGCATCTATCTCCCGAGGGCTTCAAATACTACTATAATAGTGTAACTGGGGAAAGTCGGTGGGAGAAACCCGAAGAGTTGACATTACTTGAACAGCAAAAGCAACAGCTCAGTCAGTCTGTTCAGCAGTCTCAAAGTCAGGGACAGCCTTCAATACCACCCACCCAGCAAGTTGCACAAAACCAACAGGTTCAGCCTCAAAGTCATTTCCGTGGACAAGTTCACCATCAACAAATACAGCAGCCTTCCTCATTCCAGGCATATGGAGTTACAGGTCATCAAAATGTTCAGGAACTTGGTTATAAACAGTTACAGACGTCATTTGTTTCTGGTGGTGATCCTGGACGTTATTCACAGGGTATTAATAATACACAAGAGCTGATGTGGAAAAACAGACCTACAGGAGTCTAA 2214 0.4697 MNYNHRRSPGGFRPAPLHRSNFDSPSRWSPGRVGGGFRPPPAGDGFRPMGGDEFGFNQPPPPLSGQKRGFPFSGRGASPDHFDGGHYAKLFVGSVPRTATEEDIRPLFEDHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNRHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEVFSKYGRIEDVYLMRDDQKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLIVRFADPKRPRQGDSRGPAFGSAGFGPRLDAPGTRLPSNNSDPMGDHIPPPNAWRPIHHPNTGTSFNAGFHGMGPPSIPRSGDMALPVNAGGPMTGVGVSIDGRFQTQSPSAMPQQNFNQPPLQIPPVNQQIPPSQKPIQSSQEFPPSHQLYPQAPIPYPQTSTHPSLRQHGQPQPLSAGPQGLGINAQFSVSQPQTQQSVLSATFPQTSLDTSMQSNKALTTPSQQQIPPSMQQQQQHSLQPLPQSPSQLAQLLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQALPLQHHAEATKTQSQWGGTVSHAATGTHVAAPAAGVPSSTPTTSVQPISQNTTLGKCNWTEHLSPEGFKYYYNSVTGESRWEKPEELTLLEQQKQQLSQSVQQSQSQGQPSIPPTQQVAQNQQVQPQSHFRGQVHHQQIQQPSSFQAYGVTGHQNVQELGYKQLQTSFVSGGDPGRYSQGINNTQELMWKNRPTGV* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4944 737 Coils Coil 628 648 - -
Mal5g4944 737 Gene3D - 83 175 IPR012677 -
Mal5g4944 737 PANTHER RNA BINDING PROTEIN 34 669 - -
Mal5g4944 737 SUPERFAMILY WW domain 599 631 IPR036020 GO:0005515
Mal5g4944 737 Gene3D - 595 645 - -
Mal5g4944 737 MobiDBLite consensus disorder prediction 536 555 - -
Mal5g4944 737 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 259 IPR000504 GO:0003723
Mal5g4944 737 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 34 669 - -
Mal5g4944 737 SMART rrm1_1 89 165 IPR000504 GO:0003723
Mal5g4944 737 SMART rrm1_1 180 255 IPR000504 GO:0003723
Mal5g4944 737 Gene3D - 176 267 IPR012677 -
Mal5g4944 737 ProSiteProfiles WW/rsp5/WWP domain profile. 600 627 IPR001202 GO:0005515
Mal5g4944 737 MobiDBLite consensus disorder prediction 349 438 - -
Mal5g4944 737 SUPERFAMILY RNA-binding domain, RBD 179 276 IPR035979 GO:0003676
Mal5g4944 737 MobiDBLite consensus disorder prediction 259 293 - -
Mal5g4944 737 Pfam WW domain 599 625 IPR001202 GO:0005515
Mal5g4944 737 CDD WW 597 627 IPR001202 GO:0005515
Mal5g4944 737 SMART ww_5 595 627 IPR001202 GO:0005515
Mal5g4944 737 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 169 IPR000504 GO:0003723
Mal5g4944 737 CDD RRM2_FCA 180 259 IPR034645 -
Mal5g4944 737 MobiDBLite consensus disorder prediction 465 499 - -
Mal5g4944 737 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 153 IPR000504 GO:0003723
Mal5g4944 737 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 247 IPR000504 GO:0003723
Mal5g4944 737 MobiDBLite consensus disorder prediction 1 64 - -
Mal5g4944 737 MobiDBLite consensus disorder prediction 353 377 - -
Mal5g4944 737 SUPERFAMILY RNA-binding domain, RBD 72 173 IPR035979 GO:0003676
Mal5g4944 737 MobiDBLite consensus disorder prediction 386 438 - -
Mal5g4944 737 MobiDBLite consensus disorder prediction 634 677 - -
Mal5g4944 737 ProSitePatterns WW/rsp5/WWP domain signature. 600 625 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4944 Mal-Chr5 123013116 123025995 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4944 87 265 Eukaryotic Initiation Factors Gene Family AT1G71770 25.128 7.80e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4944 - - gmx:100798390 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4944 5 123013116 123025995 Mal5g4944 5 123013116 123025995 ECH