Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4940 ATGGCGAATTCTTCAGCAGCAACAGCATTTTCAGATGAGATTCCAAACAAGAAGAACAAGGGAACTTGTATAATCAATTTCCCTTTCTCACCTGCTTTACCATCATGCAGCATCTTTGACATGATCCCACCATCACAATCTGATGATCAAAAAGCTTCTTCCTTTGCTGGTTACATCGATTTGTTGAGTTCAAATGATTTCACTTCTTCTTCTACTTTATTCGATTGGTTTCCCACCATTGATGCTGACATGTCAGTACCACCACCTGCCACCTCCACCACCCAAGTTAACCCCCAGCTGCCTCCTTTACCGGTGGTAGAACCATCCCCCGCCGCGTCCGAGGTCTTGAATAATCCTGCCACTCCTATCTCTGTTTCCTCTTCAATTTCTTCATCTTCCAATGAAACTGGTGTTGCAAACAAAGTAACAGTAGCAGAGAATGAACATGAAGAAGAACTTGAAGGAGATGAAGCTGATGAGAAAGATGAAGATCATGGAATCAGGCTTGTAGAGAATCGAAATGATCATCAAGATCAGACTAAGAAACTGCTGAAACCAAGGAAGAAGAACAACAAGAAGGAAAGAGCAGCAAGAGTTACTTTCAAGACAAAGAGTGAAGTTGATCATATGGATGATGGTTATAGGTGGCGCAAGTATGGCCAAAAACCAGTCAAAAACAGCCCTTATCCCAGGAGCTATTACCGTTGCACTGCTGCAAGTTGTGAGGTGAAGAAGCGTATAGAGCGTTCGGCGGCAGATTCTTCAATTGTGCTAACCAGCTATGAAGGCCAGCACACTCACTTATCCCCGGTTCTTTTGCGTGCTGCTAACCTTGGGATCATGCCCGATCCTTCTGGTTTCCAAGAACAGAACCACCAACATCACATTACAACTAGTGGTGTTGGTAGTTCTGTTCTTGGAAACGAATTTGCAATGTCTCAATCGCAACAATATCAACAATTACAGGATCAATATCAGAATGTGCTTCATCAGCAGCGGAAGGCAGTGCCATCTTTGTTATATAACACTAATTACAATAACTCCTTCAACATTTCTCCACTTCTTAATGTTGTTAACTCTGCTGATAATTTTCTGAACCATTCGAAATCGTTTGGTGGATTCCTTCAAAATCAAGAGAGTTATAATGTAGGTAATTCTTCTGTGTCTTCTTCTATGTTGACAGCTAATGATCCGGTGAGGAACAATAATGGACTTCTTCAAGACATGTTTGTGCCAATGGAGATGGGAGGAGCTGGAGCTGGAGAAGGAAGATGA 1275 0.4235 MANSSAATAFSDEIPNKKNKGTCIINFPFSPALPSCSIFDMIPPSQSDDQKASSFAGYIDLLSSNDFTSSSTLFDWFPTIDADMSVPPPATSTTQVNPQLPPLPVVEPSPAASEVLNNPATPISVSSSISSSSNETGVANKVTVAENEHEEELEGDEADEKDEDHGIRLVENRNDHQDQTKKLLKPRKKNNKKERAARVTFKTKSEVDHMDDGYRWRKYGQKPVKNSPYPRSYYRCTAASCEVKKRIERSAADSSIVLTSYEGQHTHLSPVLLRAANLGIMPDPSGFQEQNHQHHITTSGVGSSVLGNEFAMSQSQQYQQLQDQYQNVLHQQRKAVPSLLYNTNYNNSFNISPLLNVVNSADNFLNHSKSFGGFLQNQESYNVGNSSVSSSMLTANDPVRNNNGLLQDMFVPMEMGGAGAGEGR* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4940 424 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 57 352 IPR044810 GO:0003700
Mal5g4940 424 Pfam WRKY DNA -binding domain 211 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mal5g4940 424 ProSiteProfiles WRKY domain profile. 205 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mal5g4940 424 Coils Coil 311 331 - -
Mal5g4940 424 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 57 352 - -
Mal5g4940 424 SUPERFAMILY WRKY DNA-binding domain 203 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mal5g4940 424 SMART WRKY_cls 210 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mal5g4940 424 Gene3D WRKY domain 195 271 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4940 Mal-Chr5 122952985 122954770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4940 177 286 WRKY Transcription Factor Family AT2G47260 64.545 1.65e-44 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mal5g4940 WRKY 7.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4940 - - mtr:MTR_4g122530 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4940 5 122952985 122954770 Mal5g4940 5 122952985 122954770 ECH
Mal4g3806 4 111321525 111323197 Mal5g4940 5 122952985 122954770 PCT