Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4896 ATGATGCCACATAACTTATCTGGTCAACTTGTTGGATCAGAGATACATGGATTCCACACATTGCAAGAGCTGGATGTTGCAGGCATTATGGAGGAAGCAAGAACAAGATGGCTTCGTCCTAATGAGATTCATGCCATGCTTTGTAATAACAAGTATTTCACCATCAATGTCAAGCCAATGAATTTACCCAAAAGTGGTACTATCGTATTATTTGACCGCAAGATGCTTCGGAACTTTAGAAAAGATGGGCACAACTGGAAAAAGAAAAAGGATGGGAAAACTGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATCCATGTATATTATGCACATGGTCAAGATAACCCAAACTTTGTTCGTAGATGTTATTGGCTGCTTGATAAGAGTTTGGAACACATAGTCCTTGTTCATTACCGTGAAACACAAGAGTCTCAAGGTTCTCCCATCACTCCAGTAAATTCAAACTCTACTACTGCCTCTGATCCAACTGCACCATGGATTTTGTCGGAAGAAATAGATTCGGGGACCAAAACTGCATATGCTGGTGGTATTAATGACAATGTAACAGTCAAAAGTCATGAACTGAGGCTTCATGAGCTTAATACACTTGAATGGGATGACCTGGTCATTGCAAACGATCTTAACACCTCAACTACACCTAATGGAGGAAAAGTTCCATATTTTGATCAACCAAATCAAGTTTTATTGAGTCACAGTTTTAGCAATGTAGCTAGCAATGCATCTGCAGGAATTCGTTCTTTTGATAATTCAACTCAGGCAATTGGAGTGAGCAATAGTGTTCCATTCAATTTTTCAGAAAGTGTTACTCTTCAGACAATTGACAATCAAGGAAATCTAAATGAGCAGAGAAACCATCATGTCTCTTCAAGTGGTGTTGAATCCTTAAACACTTTGGTCAATGACAGATTGCAAAGTCAGGACAGCTTTGGAATGTGGGTGAACCAAATCATGTCTGACTCCCCTTGTTCAGTTGATGATTCTGCTCTTGGATCCTCAGTTTCTTCCGCTAACGAATCATATTCATCTCTGGTAGTGGATAATCAACAACTTTCCCTACCAGAACAAGTGTTTAGTCTCACCGATGTGTCTCCTGCGTGGGTGTCTTCCACAGAGAAATCAAAGATCCTAGTGACTGGACTCTTTCATAAAGACTATCTGCACCTCCCAAAGTCCAATCTAATGTGTGTCTGTGGTGATGCAAGTGTTCCTGCAGAAATTGTTCAGGATGGGGTCTACAGTTGTTGGCTACCTCCGCATTCTCCAGGATTTGTGAATCTCTACTTGAGCTTTGATGGTCATAACCCTATCAGCCAAATTGTTACTTTTGAGTATCGTACTCTTGTTTTGCATGATCCAGTAGCTTCTGTGGAAGAGAAGAACAACTGGGACGAGTTTCGACTTCAAATGAGGCTTGCTTATTTGCTCTTTGCTAAACAGCAGAGTCTCGATGTCATCTCTAGTAAAGTATCACATAGTAGACTAAAGGAGGCAAAGGAATTCTCCTTAAAGACATCATTTATTTCCAATACTTGGCAATACTTAATGAAGTCAACAATAGACAACCAAATTCCATTTTCACAAGCAAAAGATGCCCTGTTTGGAATTGCATTGAAAAACAGATTAAAGGAATGGCTTTCGGAAAGAATTGTTTTAGGATTAAAGACTACTGAATATGATGCTCAAGGCCAAAGTGTCATCCATTTGTGTGCAATTTTGGGATATACATGGGCTGTTACTTTATTTTCATGGTCAGGCTTGTCGCTTGATTTTCGGGATAAATTTGGATGGACTGCTCTTCATTGGGCAGCATATTACGGCAGGGAGAAAATGGTTGCAACTTTGTTGTCAGCTGGGGCAAAGCCGAATTTGGTCACAGATCCAACTCGCCAAAACCCGGGTGGATGTACTGCCGCTGATCTTGCATATACGAGGGGTTATCATGGCTTAGCAGCTTATCTTTCGGAGAAGTCTCTAGTTGAGCAGTTCCATGACATGAGCTTAGCTGGAAATATCAGTGGCTCACTGGAAACTAGCACTGATGATCCAGTAAATTCTGAGAATCTTACCGAGGAACAGCTCTACCTGAAAGATACATTGGCAGCTTACCGGACAGCTGCCGATGCAGCAGCACGCATACAAGAAGCATATAGGGAGCACTCCTTAAAGTTACAAACAGAGGCGGTTGAGTTTTCCAGCCCAGAAGCTGAAGCACGCAAAATAGTTGCAGCAATGAAAATTCAGCATGCCTTCCGTAATTTTGAGACAAAGAAAGTAATGGCTGCTGCTGCTCGCATACAGCATAGATTCCGTACATGGAAGATTCGTAGAGATTTTCTCAACATGCGCCGTCAGGCTATCAAGATTCAAGCTGCTTTCCGGTGCTTTCAACAACGGAAACAATATCATAAAATTCTATGGTCAGTTGGGGTGGTTGAAAAAGCAGTGTTGCGTTGGCGTTTAAAGAGAAAGGGCTTCCGTGGGCTCCAGATTAATAATGAGGAAGCAGTGGAAGATCAGAATCAGCAAAGTAACGGAGAGGAGGAATTCTTTCGGACTGGAAGGAAACAAGCTGAAGAGCGTGTTGAGAGAAGTGTAATACGAGTGCAGGCTATGTTCCGTTCTAAGAAAGCACAAGAAGATTACAGGAGGATGAAGTTGGCCCTTAATCAAGCAAAGCTGGAACGGGAATATGAAAAAATGCTTAGTAATGAAGTTGAAATGGAAATGAAGACATAG 2772 0.4141 MMPHNLSGQLVGSEIHGFHTLQELDVAGIMEEARTRWLRPNEIHAMLCNNKYFTINVKPMNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYWLLDKSLEHIVLVHYRETQESQGSPITPVNSNSTTASDPTAPWILSEEIDSGTKTAYAGGINDNVTVKSHELRLHELNTLEWDDLVIANDLNTSTTPNGGKVPYFDQPNQVLLSHSFSNVASNASAGIRSFDNSTQAIGVSNSVPFNFSESVTLQTIDNQGNLNEQRNHHVSSSGVESLNTLVNDRLQSQDSFGMWVNQIMSDSPCSVDDSALGSSVSSANESYSSLVVDNQQLSLPEQVFSLTDVSPAWVSSTEKSKILVTGLFHKDYLHLPKSNLMCVCGDASVPAEIVQDGVYSCWLPPHSPGFVNLYLSFDGHNPISQIVTFEYRTLVLHDPVASVEEKNNWDEFRLQMRLAYLLFAKQQSLDVISSKVSHSRLKEAKEFSLKTSFISNTWQYLMKSTIDNQIPFSQAKDALFGIALKNRLKEWLSERIVLGLKTTEYDAQGQSVIHLCAILGYTWAVTLFSWSGLSLDFRDKFGWTALHWAAYYGREKMVATLLSAGAKPNLVTDPTRQNPGGCTAADLAYTRGYHGLAAYLSEKSLVEQFHDMSLAGNISGSLETSTDDPVNSENLTEEQLYLKDTLAAYRTAADAAARIQEAYREHSLKLQTEAVEFSSPEAEARKIVAAMKIQHAFRNFETKKVMAAAARIQHRFRTWKIRRDFLNMRRQAIKIQAAFRCFQQRKQYHKILWSVGVVEKAVLRWRLKRKGFRGLQINNEEAVEDQNQQSNGEEEFFRTGRKQAEERVERSVIRVQAMFRSKKAQEDYRRMKLALNQAKLEREYEKMLSNEVEMEMKT* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4896 923 ProSiteProfiles Ankyrin repeat profile. 606 638 IPR002110 GO:0005515
Mal5g4896 923 SUPERFAMILY E set domains 371 457 IPR014756 -
Mal5g4896 923 Gene3D - 767 817 - -
Mal5g4896 923 SMART iq_5 769 791 IPR000048 GO:0005515
Mal5g4896 923 SMART iq_5 792 814 IPR000048 GO:0005515
Mal5g4896 923 SMART iq_5 872 894 IPR000048 GO:0005515
Mal5g4896 923 Gene3D Immunoglobulins 365 459 IPR013783 -
Mal5g4896 923 ProSiteProfiles IQ motif profile. 874 902 IPR000048 GO:0005515
Mal5g4896 923 SMART ANK_2a 606 635 IPR002110 GO:0005515
Mal5g4896 923 SUPERFAMILY Ankyrin repeat 547 668 IPR036770 -
Mal5g4896 923 Gene3D - 536 674 IPR036770 -
Mal5g4896 923 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 923 - -
Mal5g4896 923 Coils Coil 886 922 - -
Mal5g4896 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 714 820 IPR027417 -
Mal5g4896 923 Pfam IPT/TIG domain 371 456 IPR002909 -
Mal5g4896 923 ProSiteProfiles IQ motif profile. 771 799 IPR000048 GO:0005515
Mal5g4896 923 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 16 923 - -
Mal5g4896 923 Pfam CG-1 domain 32 145 IPR005559 GO:0003677
Mal5g4896 923 Pfam IQ calmodulin-binding motif 795 814 IPR000048 GO:0005515
Mal5g4896 923 Pfam Ankyrin repeats (3 copies) 568 635 IPR002110 GO:0005515
Mal5g4896 923 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Mal5g4896 923 ProSiteProfiles IQ motif profile. 793 817 IPR000048 GO:0005515
Mal5g4896 923 SMART CG_1_2 29 147 IPR005559 GO:0003677
Mal5g4896 923 ProSiteProfiles Ankyrin repeat region circular profile. 606 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4896 Mal-Chr5 122316081 122323980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4896 29 906 CAMTA Transcription Factor Family AT3G16940 54.886 0.0 951
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Mal5g4896 Ank_2 2.3e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4896 K21596 - gmx:100793970 1496.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4896 5 122316081 122323980 Mal5g4896 5 122316081 122323980 ECH
Mal5g4896 5 122316081 122323980 Mal4g3756 4 110343918 110344464 PCT