Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4888 ATGGGAAGAGCTCCTTGTTGTGAGAAGATTGGTTTGAAGAAAGGAAGATGGACTGCTGAAGAGGATAAGATCTTAACTGATTATATCCAAGAACATGGTGAAGGATCTTGGAGATCTTTGCCAAAGAATGCAGGTTTGTTGAGATGTGGGAAGAGTTGTAGACTGAGATGGATAAACTACTTAAGATCAGATGTGAAGAGAGGTAACATCACTCCTCAAGAGGAAGAGATCATTGTCAAGTTGCATGCTGTTCTTGGTAACAGGTGGTCTGTAATAGCTGGACATTTACCCGGACGTACAGATAATGAGATAAAAAACTATTGGAACTCTCATTTGAGGAGAAAAATTTACTGTTTCATGAAGTCATTAAATGAGTCATTTCCACCAATTGACATAGCTGCTGTTAGCCTAGCTGCTGCTTCCAAGAGAAGAGCTGGTAGAGGAGCTTCAACAACTCAACATGCACCAAAGCAAGATCAGAACAACAAAAACAACAACAAGAAAGAGGTTCTTGAAGTTCAACTACCAACACTAGATAAAAGAAAAGCAAATGTTAATGGAGAAGAAGAGCTACAACAAGGTTATAATACTAATGATTATGATACAACTAATTCATGTCCTAACATGAATGAATTAATTGATCACACTTTGGGACCATATGAATGGTTAGATGATGAAATTATAAAACTAAGTTACATGTTTGAAAGTGGAGTACTTGTTAGTCCAGATCATGAGATTAATAATATTAATGTAACTAGTGATTATAATATTCTAGATCCTAATTGTGGAGTATTAGTGGGAAATAATGATGGTGGTGTTTGGAGTTCATCAAATGGTGCTGAAAGTGGAGAGTGGAATAATAATAATAATAATAATAACACTACTAGCTGTAATTCCTCTGTGAATTCTGTTTATGAATATCAGTGGCCTGATATGCATTTAGAAGGTAGTTGTGTTCAATCCTACAATCAACAATGGGACCTTTGTGATCAACAAGACCAAGATGTTAATTGCTTCTGGGGTACTGCAAATTACCATGAAAATGGCTTTTACCACTGA 1059 0.3607 MGRAPCCEKIGLKKGRWTAEEDKILTDYIQEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKSLNESFPPIDIAAVSLAAASKRRAGRGASTTQHAPKQDQNNKNNNKKEVLEVQLPTLDKRKANVNGEEELQQGYNTNDYDTTNSCPNMNELIDHTLGPYEWLDDEIIKLSYMFESGVLVSPDHEINNINVTSDYNILDPNCGVLVGNNDGGVWSSSNGAESGEWNNNNNNNNTTSCNSSVNSVYEYQWPDMHLEGSCVQSYNQQWDLCDQQDQDVNCFWGTANYHENGFYH* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4888 352 Gene3D - 13 66 - -
Mal5g4888 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mal5g4888 352 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mal5g4888 352 CDD SANT 16 61 IPR001005 -
Mal5g4888 352 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mal5g4888 352 SMART sant 66 114 IPR001005 -
Mal5g4888 352 SMART sant 13 63 IPR001005 -
Mal5g4888 352 PANTHER MYB TRANSCRIPTION FACTOR 2 297 - -
Mal5g4888 352 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mal5g4888 352 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mal5g4888 352 Gene3D - 71 116 - -
Mal5g4888 352 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mal5g4888 352 CDD SANT 71 112 IPR001005 -
Mal5g4888 352 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 297 - -
Mal5g4888 352 MobiDBLite consensus disorder prediction 144 169 - -
Mal5g4888 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mal5g4888 352 MobiDBLite consensus disorder prediction 146 160 - -
Mal5g4888 352 MobiDBLite consensus disorder prediction 181 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4888 Mal-Chr5 122225727 122227877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4888 1 230 MYB Transcription Factor Family AT5G49330 53.043 4.34e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal5g4888 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4888 K09422 - gmx:100805532 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4888 5 122225727 122227877 Mal5g4888 5 122225727 122227877 ECH