Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4887 ATGTCGCCTCCTCCTAATGACAAGTCCAATGCTCCGCGTAAAAGCAACAAAGCCGGCATCGACGCCGACGATGGTCGCCGGAGACGAGAAGCCGACATGGTCGAGATTCGCAAGAAAGGGCGCGACGACAACTTGCAGAAGAAGCGTCGTCAAGGCCTTCAAAATCAGCCGCAGTTCCCCATTACTGTCGATACAAAGTTAGAGAGTCTTCCTGCAATGGTTGTTGGTGTCTGGTCCAACGATGCTAGTGCGCAACTGGAAGCCACCACAATGTTTCGGAAACTGCTTTCAATTGACGGGAGTGCTCCGATTGAGCAGGTTATTCAATCCGGTGTTGTGCCACGTTTTGTTGAGTTTCTTGCTAGGGAGGACTCCCCTCAACTTCAGTTTGAGGCTGCGTGGACACTGACAAACATAGCATCTGGAACTTCTGAGCACACTAAGGTGGTAATTGATCACGGAGCAGTTCCTCTATTTGTCGCGTTGCTTAGATCACCTAATGAAGATGTTCGAGAGCAGGCTGTGTGGGCTTTGGGAAATGTTGCGGGTGACTCCCCTAGGTGTCGTGATCTAGTGCTCAGCCATGGTGCCCTTTTCTCACTATTGGCCCAGTTGAACGAGCACACCAGAGATTCAATGCTGCGAAATGCCACTTGGACTTTATCAAACTTCTGTAGGGGGAAGCCACAACCTGCATTTGAGCTGGTGAAACCTGCACTTCCAGCTCTTGAGCGTTTGGTTTTGTCGGATGATAAGGAAGTTTTGGCAGATGCCTGCTGGGCTTTATCATACATATCTGATGGCACAAATGACAAAATCCAAGAAGTTATTGACACAGGTGTATGTGGCCGACTGGTGCAGCTCCTTCAACACCAATCTGCTGTGGTGTTAATCCCTGCTGTTCGTGCAGTGGGAAATATTGTGACTGGAGATGATACGCAGACTCAGTTGATGATCAATCATGGTGCACTCCCTTACCTTTTGAGTCTTTTGACACAAAATCATAATAAAAGCATCAAGAGAGAATCTTGTTGGACTATATCAAACATAACAGCTGGAACTATGGAACAAATACAGGCTGTTATTGAAGCTGGTCTTATTGCTCCGCTTGTCAATCTTCTTCAAAATGCAGAGTTTGAGATTAAAAAAGAAGCTGCATGGGCAATAACAAATGCTACAGCTGGTGGAACTCATGAGCAAGTCAAGTACTTGGTGGGTCAGGGTTGCATAAAACCACTGTGTGATCTGCTTGTTTGCCCCGATGCAAGAATTATCAATGTCTGTTTAGAGGGCCTAGAGAATATTCTGAAAGTTGGAGAAACAGAGAAGACTCTGGGTAACACTGGAGATGACAACTTGTATGCTCAGATGATAGATGATTATGAAGGATTGGAGAAGATAGAAAACCTGCAGAATCATGATAACGATAAAATATATGAGAGCGCAGTTAAACTTCTTGAAACATATTGGTCGAATGATGAAGATGAGATACTACCTTCAGGTGATGGTGATCAATCTGGTTTCAACTTTGGAAGCCAAGATCTTTCATCTGGTGGATTCAACTTCAGATGA 1572 0.4542 MSPPPNDKSNAPRKSNKAGIDADDGRRRREADMVEIRKKGRDDNLQKKRRQGLQNQPQFPITVDTKLESLPAMVVGVWSNDASAQLEATTMFRKLLSIDGSAPIEQVIQSGVVPRFVEFLAREDSPQLQFEAAWTLTNIASGTSEHTKVVIDHGAVPLFVALLRSPNEDVREQAVWALGNVAGDSPRCRDLVLSHGALFSLLAQLNEHTRDSMLRNATWTLSNFCRGKPQPAFELVKPALPALERLVLSDDKEVLADACWALSYISDGTNDKIQEVIDTGVCGRLVQLLQHQSAVVLIPAVRAVGNIVTGDDTQTQLMINHGALPYLLSLLTQNHNKSIKRESCWTISNITAGTMEQIQAVIEAGLIAPLVNLLQNAEFEIKKEAAWAITNATAGGTHEQVKYLVGQGCIKPLCDLLVCPDARIINVCLEGLENILKVGETEKTLGNTGDDNLYAQMIDDYEGLEKIENLQNHDNDKIYESAVKLLETYWSNDEDEILPSGDGDQSGFNFGSQDLSSGGFNFR* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4887 523 Pfam Atypical Arm repeat 452 496 IPR032413 -
Mal5g4887 523 Pfam Armadillo/beta-catenin-like repeat 101 141 IPR000225 GO:0005515
Mal5g4887 523 Pfam Armadillo/beta-catenin-like repeat 314 352 IPR000225 GO:0005515
Mal5g4887 523 Pfam Armadillo/beta-catenin-like repeat 144 182 IPR000225 GO:0005515
Mal5g4887 523 Pfam Armadillo/beta-catenin-like repeat 398 435 IPR000225 GO:0005515
Mal5g4887 523 Pfam Armadillo/beta-catenin-like repeat 270 308 IPR000225 GO:0005515
Mal5g4887 523 Pfam Armadillo/beta-catenin-like repeat 356 393 IPR000225 GO:0005515
Mal5g4887 523 SMART arm_5 100 141 IPR000225 GO:0005515
Mal5g4887 523 SMART arm_5 143 183 IPR000225 GO:0005515
Mal5g4887 523 SMART arm_5 228 267 IPR000225 GO:0005515
Mal5g4887 523 SMART arm_5 311 352 IPR000225 GO:0005515
Mal5g4887 523 SMART arm_5 354 394 IPR000225 GO:0005515
Mal5g4887 523 SMART arm_5 184 226 IPR000225 GO:0005515
Mal5g4887 523 SMART arm_5 397 437 IPR000225 GO:0005515
Mal5g4887 523 SMART arm_5 269 309 IPR000225 GO:0005515
Mal5g4887 523 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 365 393 IPR000225 GO:0005515
Mal5g4887 523 MobiDBLite consensus disorder prediction 505 523 - -
Mal5g4887 523 Pfam HEAT-like repeat 215 265 - -
Mal5g4887 523 Gene3D - 68 491 IPR011989 -
Mal5g4887 523 MobiDBLite consensus disorder prediction 17 49 - -
Mal5g4887 523 PANTHER IMPORTIN SUBUNIT ALPHA 5 515 - -
Mal5g4887 523 MobiDBLite consensus disorder prediction 497 523 - -
Mal5g4887 523 MobiDBLite consensus disorder prediction 1 60 - -
Mal5g4887 523 SUPERFAMILY ARM repeat 12 494 IPR016024 -
Mal5g4887 523 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Mal5g4887 523 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 365 IPR000225 GO:0005515
Mal5g4887 523 Gene3D - 13 51 IPR036975 GO:0006606
Mal5g4887 523 PANTHER IMPORTIN ALPHA 5 515 - -
Mal5g4887 523 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 154 196 IPR000225 GO:0005515
Mal5g4887 523 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 111 154 IPR000225 GO:0005515
Mal5g4887 523 Pfam Importin beta binding domain 17 90 IPR002652 GO:0006606|GO:0061608
Mal5g4887 523 PIRSF Importin_alpha 4 522 IPR024931 GO:0005737|GO:0006606|GO:0061608
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4887 Mal-Chr5 122219567 122223245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4887 278 459 U-box Gene Family AT2G23140 26.230 1.11e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4887 K15042 - gmx:100808498 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4887 5 122219567 122223245 Mal5g4887 5 122219567 122223245 ECH
Mal5g4887 5 122219567 122223245 Mal1g1493 1 19346576 19351137 ECH
Mal5g4887 5 122219567 122223245 Mal3g4855 3 128592899 128597053 ECH
Mal5g4887 5 122219567 122223245 Mal4g3735 4 109823103 109826361 PCT