Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4884 ATGGTAGTTGATCACAGTGGAAAGGGATCAGACGGTGAAGATTCAAACCCTAACGCCGCCGTTTCTTCAGATAACAATCCAAAGAAAACCTGTGCCGACTGCGGAACTTCCAAGACTCCTCTATGGCGTGGTGGTCCTGCAGGTCCAAAGTCACTGTGCAATGCTTGCGGGATCAGGAGCAGGAAGAAGAAGAGAGCGATTTTAGGGATAAGCAAAGGAAGCAACGAAGAAGGAACAAAAAAGGGGAAAAAGAGTAATAACGGGGGTGGTGGAAGCAAAGTTGGGGATAATTTGAACATGAAGCAGAGATTATTGAATTTAGGGAAAGAAGTGTTTATGAATCGATCGCATTGGAAGAAATTGGGAGAAGATGAACAAGCTGCGGTGTTGTTGATGTCTCTATCTTATGGATCTGTTTATGCCTAA 426 0.4437 MVVDHSGKGSDGEDSNPNAAVSSDNNPKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGISKGSNEEGTKKGKKSNNGGGGSKVGDNLNMKQRLLNLGKEVFMNRSHWKKLGEDEQAAVLLMSLSYGSVYA* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4884 141 ProSitePatterns GATA-type zinc finger domain. 31 56 IPR000679 GO:0006355|GO:0043565
Mal5g4884 141 MobiDBLite consensus disorder prediction 12 33 - -
Mal5g4884 141 ProSiteProfiles GATA-type zinc finger domain profile. 25 61 IPR000679 GO:0006355|GO:0043565
Mal5g4884 141 MobiDBLite consensus disorder prediction 67 97 - -
Mal5g4884 141 Pfam GATA zinc finger 31 65 IPR000679 GO:0006355|GO:0043565
Mal5g4884 141 Gene3D - 26 89 IPR013088 GO:0006355|GO:0008270
Mal5g4884 141 MobiDBLite consensus disorder prediction 1 49 - -
Mal5g4884 141 SMART GATA_3 25 75 IPR000679 GO:0006355|GO:0043565
Mal5g4884 141 CDD ZnF_GATA 30 65 IPR000679 GO:0006355|GO:0043565
Mal5g4884 141 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 24 65 - -
Mal5g4884 141 PANTHER OS01G0976800 PROTEIN 4 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4884 Mal-Chr5 122091860 122092484 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4884 1 141 C2C2-Gata Transcription Factor Family AT5G49300 54.861 8.37e-42 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal5g4884 GATA 1.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4884 - - aprc:113847917 209.534
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4884 5 122091860 122092484 Mal5g4884 5 122091860 122092484 ECH
Mal5g4884 5 122091860 122092484 Mal3g4860 3 128670650 128671468 ECH