Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4881 ATGAATCTAAGCAACGGTAAAGGATCAATTTCTACGGTTACTTCAACAGCTACTATGAAATCCGGTGAAGGTTCCGATCAGTTTCCGGCGGGTCTGCGTGTTCTTGTTGTGGATGATGATCCCACGTGTCTTATGATTCTTGAGAAGATGTTGCGCACATGTCTTTATGAAGTTACGAAATGCAATCGAGCTGAAACTGCGCTTTCACTACTAAGAGAGAACAAGAATGGATTTGACATTGTTATTAGTGATGTTCATATGCCTGATATGGATGGATTTAAACTCTTAGAACATATTGGATTGGAAATGGACCTTCCGGTTATTATGATGTCTGCGGATGATGGTAAAAGTGTTGTTATGAAGGGTGTAACACACGGTGCTTGTGATTACCTAATAAAACCTGTTCGTATCGAGGCTTTGAAGAACATATGGCAGCATGTGGTTCGGAAGAAAAAGAACGAGTGGAAAGATACGGAGCAATCGGGTAGTGCTGATGAGGGAGATCGACATCCAAAGGCATCTGATGATGCTGATTATTCGTCTTCTGCTAATGAAGGTAATTGGAGAAACTCGAGAAAGAGAAGGGATGATGAAGAGGAAGGTGACGATAGAGATGACTCGTCAACATTAAAGAAGCCTCGGGTTGTTTGGTCTGTCGAGCTCCATCAACAGTTTGTGGCTGCTGTGGATCAACTTGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCACTTGCAGAAATATCGATTATATCTTAGAAGGCTGAGTGGAGTTTCTCAGCACCAGAATAACTCATTTCTCAGTCCACAAGAGGCATCATTTGGCACAATTTCATCAATGAATGGACTTGATCTTCAAACTCTTGCAGCAGCTGGCCAGCTCCCAGCGCAAAGTCTAGCCACTCTTCAAGCAGCAGGACTTGGTAGGTCAACTGTGAAATCAGGCTTACCAATGCCTCTCATGGATCAAAGGAACCTTTTCAGTTTCGAAAACCCAAGGTTGAGATTTGGAGAAGGGCAACCACAACTTTTGAACAGTAATAATAAACCAACAAATCTTCTTCACGGAGTTCCTACAAACATGGAGCCAAAGCAACTCGCCAATTTGCACCAGTCTGCAGCACAATCCCTCGGCAACTTGAATATGCGAGTTCCCGCTTCTTCTACACAGGGAAATCCCTTATTGATGCAGATGGCACAATCCCAACCTAGAGGTCCAATGCTAAGTGAAAATACCGGTCCTCATGTTCCAAGATTACCGAACCTCTTGGGGCAGTCTACTGTGTCAAATGGAATTTCTGACGGTCTTATGGGGAGAAACAACATGGCTAGTAGCAGCAGAGCGCCTTCATTTAATCCTGTTCCACAGAGCTCTTCGTTTTTGAATTTTCCCATGAATCAAAGCACTGAAATGTCTGTTAGCAATTTCCCTCTCGGAAGCACTCCAGGTATATCTAATATCACAACCAAAGGCTCATTTCAAGCTGAAGTTAATTCGGGAATTAAAGGATCAGCTGGATTTCCAAGTTATGATATTTTTAACGAACTGAACCATCAGAAGTCCCGGGATTGGGGGATGACAAACCAAGGTCTAACATATGATTCCTCATCGCATGCAAATCCTTTGCATGGTAACATCGATGTCTCTCCGTCGGTTTTAGTCCATCAGGGCTTTTCTTCTGCGCAACAAACTGGACATAGCAGAGATGCTTCTTTGCTTGGAAAATCTCCTTTCACTCTTGGAGAAGGCTTGGAACAAGCTAATCTCCAAAATGGTGGCGGTCAACACTTCAATCCTCTTTATGTTGAAAATTCAACAAGGGTTAAGGCTGAAAGAGTTCCTGACGCGAGCTCCCATACTAACCTCTTCCCTGATCATTACGGGCAGGAGGATCTCATGAGTGCACTTCTGAAACAGGAAGTCATTGGACAAGGCGAGAATGAGTTTGACTTTGAAGGGTATTCTCTGGACAACATTCCTGTCTAG 2031 0.4343 MNLSNGKGSISTVTSTATMKSGEGSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKKKNEWKDTEQSGSADEGDRHPKASDDADYSSSANEGNWRNSRKRRDDEEEGDDRDDSSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNSFLSPQEASFGTISSMNGLDLQTLAAAGQLPAQSLATLQAAGLGRSTVKSGLPMPLMDQRNLFSFENPRLRFGEGQPQLLNSNNKPTNLLHGVPTNMEPKQLANLHQSAAQSLGNLNMRVPASSTQGNPLLMQMAQSQPRGPMLSENTGPHVPRLPNLLGQSTVSNGISDGLMGRNNMASSSRAPSFNPVPQSSSFLNFPMNQSTEMSVSNFPLGSTPGISNITTKGSFQAEVNSGIKGSAGFPSYDIFNELNHQKSRDWGMTNQGLTYDSSSHANPLHGNIDVSPSVLVHQGFSSAQQTGHSRDASLLGKSPFTLGEGLEQANLQNGGGQHFNPLYVENSTRVKAERVPDASSHTNLFPDHYGQEDLMSALLKQEVIGQGENEFDFEGYSLDNIPV* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4881 676 PIRSF RR_ARR_type-B 14 668 IPR017053 GO:0003677|GO:0003700|GO:0009736
Mal5g4881 676 Gene3D - 209 271 - -
Mal5g4881 676 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 268 IPR017930 -
Mal5g4881 676 SMART REC_2 32 144 IPR001789 GO:0000160
Mal5g4881 676 Pfam Response regulator receiver domain 34 142 IPR001789 GO:0000160
Mal5g4881 676 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 647 - -
Mal5g4881 676 Pfam Myb-like DNA-binding domain 214 264 IPR001005 -
Mal5g4881 676 MobiDBLite consensus disorder prediction 1 23 - -
Mal5g4881 676 MobiDBLite consensus disorder prediction 152 176 - -
Mal5g4881 676 ProSiteProfiles Response regulatory domain profile. 33 148 IPR001789 GO:0000160
Mal5g4881 676 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 212 265 IPR006447 GO:0003677
Mal5g4881 676 SUPERFAMILY Homeodomain-like 209 269 IPR009057 -
Mal5g4881 676 MobiDBLite consensus disorder prediction 152 209 - -
Mal5g4881 676 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 647 IPR045279 GO:0009736
Mal5g4881 676 CDD REC_typeB_ARR-like 34 148 - -
Mal5g4881 676 MobiDBLite consensus disorder prediction 188 209 - -
Mal5g4881 676 SUPERFAMILY CheY-like 31 153 IPR011006 -
Mal5g4881 676 Gene3D - 32 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4881 Mal-Chr5 122041997 122045534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4881 67 676 Response Regulator Gene Family AT3G16857 51.520 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mal5g4881 Response_reg 6e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4881 - K14491 gmx:100781102 1110.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4881 5 122041997 122045534 Mal5g4881 5 122041997 122045534 ECH
Mal5g4881 5 122041997 122045534 Mal4g3731 4 109784798 109788014 PCT