Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4856 ATGAATTCAAACATGGAGAATGAAAGAGAAATCGAAAACAACTATGCACTCCGCGGCAAAATAATGTTAACCGCCATTATCATTCTCTTCATCGTTATCATTATTATGCTCTGTCTCCACGTCCTGATTCGATACTACAATCTACGTGCTCGTAGCCGTCAACACCACCGCCGTACCCGCCGTCAACCGTTTATCTTCTACGTTGATCCATCCGCCCCTACTTCACTGACACTCGCCGTCTCTCGCGGCCTTGACGCCTCCGTCATCTCCTCCCTCCCAGTTTTCAAATTTTCCTCCAAAACGGATCAGGCGGTGGACTGCGCGGTTTGTTTGTCGGAGTTTGAAGAAGGTGAAACGGGTCGGGTTTTGCCTAAATGTAATCATAGTTTTCATATTGATTGTATTGATATGTGGTTTCAGTCTCATTCTACATGTCCACTTTGTAGAGCACCCGTGGAGGCTCCGCCGGTTCAACAAGAAGTGACAATTGATATGTGTGAACCGGAACTGGTTTTGGGTTCGAGTTTTGGTCATGAAATGAACCGGTCTGAACCGGAATTTTCTTCTTCTTCTTCCTCGTGTTCTAACGAGAAACAATCTTCGTTCGTGGGTGTGAAGGTTGAGATTCCTGGAAGGAGTGAATGCGATTGCGAGAGTAGTGATTCGCCGTCGTCGTTTCGATCACCGATGAATCGTGTGTTGTCTTTCACGAGAATTCTTAGTAGAGAGAGGAAAGCGAGTGTTTCTCCCTCGTCAGATTGTGTGGCGGTGGGTGAGTCTGTGATGATCGAGAAAGATGCAGAACGAGGTGGAAGGGATGAGGAGACTCAGTGA 834 0.47 MNSNMENEREIENNYALRGKIMLTAIIILFIVIIIMLCLHVLIRYYNLRARSRQHHRRTRRQPFIFYVDPSAPTSLTLAVSRGLDASVISSLPVFKFSSKTDQAVDCAVCLSEFEEGETGRVLPKCNHSFHIDCIDMWFQSHSTCPLCRAPVEAPPVQQEVTIDMCEPELVLGSSFGHEMNRSEPEFSSSSSSCSNEKQSSFVGVKVEIPGRSECDCESSDSPSSFRSPMNRVLSFTRILSRERKASVSPSSDCVAVGESVMIEKDAERGGRDEETQ* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4856 277 SUPERFAMILY RING/U-box 100 156 - -
Mal5g4856 277 PANTHER RING-H2 FINGER PROTEIN ATL64 5 207 - -
Mal5g4856 277 SMART ring_2 107 148 IPR001841 -
Mal5g4856 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 5 207 - -
Mal5g4856 277 CDD RING-H2_EL5_like 106 149 - -
Mal5g4856 277 Pfam Ring finger domain 106 149 IPR001841 -
Mal5g4856 277 SMART FANCL_C_2 103 154 - -
Mal5g4856 277 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Mal5g4856 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 155 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4856 Mal-Chr5 121779028 121779861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4856 1 273 Rapid Response to Elicitors AT3G16720 45.425 1.41e-63 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4856 - - jre:108987300 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4856 5 121779028 121779861 Mal5g4856 5 121779028 121779861 ECH
Mal5g4856 5 121779028 121779861 Mal4g3668 4 108385185 108386072 PCT