Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4807 ATGGAAAACAACGTTGGAGGAAGTTCCTTTAATAATGATGAAAATGGAGGCATAATAAAGGAACAAGATCGGTTGTTACCAATAGCAAATGTTGGGAGGATAATGAAGCAGATATTACCACAGAATGCAAAAATCTCAAAGGAGTCAAAGGAAACAATGCAAGAGTGTGTTTCAGAGTTTATAAGCTTTGTAACAAGTGAGGCATCAGAGAAATGCAGGAAAGAAAGGAGAAAGACAGTGAATGGTGATGATATATGTTGGGCTTTGGGGACACTTGGTTTTGATGATTATGCTGAACCAATGAGAAGGTATTTGCATAGATATAGAGAATTAGAGCAACCAACGAGTCCTTGCCATGTGTCGATGTGTTACGGAGAATACAAATTAAGCACTAACCTAAGTCAACCAATACATGGATTAAGCATTAATCCTTTTTTATTACGGGAATTAAGCACTGATCTAGTCAAACAATATGCGGTATCGATATATGCATTCCAATCAAGACCACAACACACCATGCGGATGCACAATCAACTTTGTGTGAAGTGTAGTGTAAGTCACAAAATCTAG 570 0.3754 MENNVGGSSFNNDENGGIIKEQDRLLPIANVGRIMKQILPQNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGTLGFDDYAEPMRRYLHRYRELEQPTSPCHVSMCYGEYKLSTNLSQPIHGLSINPFLLRELSTDLVKQYAVSIYAFQSRPQHTMRMHNQLCVKCSVSHKI* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4807 189 SUPERFAMILY Histone-fold 22 116 IPR009072 GO:0046982
Mal5g4807 189 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 113 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mal5g4807 189 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 25 89 IPR003958 -
Mal5g4807 189 ProSitePatterns NF-YB/HAP3 subunit signature. 56 72 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mal5g4807 189 Gene3D Histone, subunit A 18 117 IPR009072 GO:0046982
Mal5g4807 189 PRINTS CCAAT-binding transcription factor subunit A signature 53 71 - -
Mal5g4807 189 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Mal5g4807 189 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Mal5g4807 189 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4807 Mal-Chr5 121279602 121281339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4807 18 112 CCAAT-HAP3 Transcription Factor Family AT2G47810 80.000 2.89e-55 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mal5g4807 CBFD_NFYB_HMF 9.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4807 K08065 - gmx:100794513 201.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4807 5 121279602 121281339 Mal4g3841 4 112194996 112198069 PCT