Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal5g4792 | ATGGAACAACGGTACGGCCGAGCAAACGATGGGTCATCGCAGTTGCACTCTGATCCGTCGCCGGAATGGACTGCTGCCGGTGGAGATACGGTTCATGAAGGTTATGGTGGATTGGGTGGTGCTGAATCGTATCCACAAAGACCAGATGAAGCTGATTGTATCTATTATTTGAGAACAGGTTTTTGCGGTTATGGTTCTAGGTGTCGGTTTAACCATCCACGTGACCGTGGCGCGGTTATTGGAGCTGCGAGGATTGCCGGGGAATATCCAGAACGAGTTGGACAGCCAGTGTGCCAGTACTATGTGAGGACAGGATCATGTAAATTTGGTGCTTCCTGCAAGTATCACCATCCTAGACAAGCGGCAGGAACTACTGCTCCCGTGCCGCTAAATTATTATGGATATCCTTTGCGAGTGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCACAGCCTGCGGGTGCTCAAATGATACCACCATCACCAGTTCCCCAAGTTTCACCTCTTCCTATGCCGGTTCCTTCACCGATTTATCAAACTGTACAGCCTCCATCCGCTCCTTCACAACAACAATATGGTGTACTTGTCGCGAGGCCACCTCTTCTACCTGGCTCATTTGTCCAGGGTCCATATGGACCTGTGGTAGTGTCCCCCACCATGGTCCCTTTTTCAGGCTGGAGCCCTTATCAGATGCAGGCTCCGGCAGCAAGTCCTATACTTCCTTCTAGTACTCAATTGAGTATTGGTTCAACACAGCTTTATGGGATAACTCAGCTACCTTCCCCAACAACTGCCTATACTGGACCTTATCAATCCTCTGGTCCCTCAGCTGGTCCTTATCAATCTTCTGGCCCCTCAACCGGTCCTTCAGGTAGTAGTCAGAAGGAACGCTCATTACCCGAAAGGCCTGATCAGCAGGAATGTCAGCATTACATGAAAACAGGGGAGTGTAAATTTGGTTCTACATGTAGATATCATCATCCGCCGGACATGGGTGCACCAAAAGTGAACCTTAGTCCTATTGGTCTTCCTTTGCGCCCGGGGACACAACCTTGCACTCATTATACCCAGCGTGGAGTTTGTAAATTTGGATCTGCATGCAAATTTGATCATCCTACGGGATCCCTGAGTTACAGTCCATCTGCTTCTTCCCTCTCTGATATGCCAGTTTCACCTTATCCCGTGGGTTCCTCCATTGGGACTCTTGCCCCATCATCCTCATCATCCGAGTTGAGGCCTGAACTTGCATCAGGATCCAGCAAGGAGCTTGCTTCATCTAGATCGTCATCATCAATGAGCACATCAACTGCATCAGCTGGCTTGACTTTGTCAACGATTGCACCGGTTTCTCAATCAAGTGCCCAACCGTCTACTCAGAGTTCCAGCTCTTTAGCAACTTCCAGTGCCACCACAAGTAGCACTGTCTCTCACACCTCAAGCTAA | 1485 | 0.4896 | MEQRYGRANDGSSQLHSDPSPEWTAAGGDTVHEGYGGLGGAESYPQRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAVIGAARIAGEYPERVGQPVCQYYVRTGSCKFGASCKYHHPRQAAGTTAPVPLNYYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGAQMIPPSPVPQVSPLPMPVPSPIYQTVQPPSAPSQQQYGVLVARPPLLPGSFVQGPYGPVVVSPTMVPFSGWSPYQMQAPAASPILPSSTQLSIGSTQLYGITQLPSPTTAYTGPYQSSGPSAGPYQSSGPSTGPSGSSQKERSLPERPDQQECQHYMKTGECKFGSTCRYHHPPDMGAPKVNLSPIGLPLRPGTQPCTHYTQRGVCKFGSACKFDHPTGSLSYSPSASSLSDMPVSPYPVGSSIGTLAPSSSSSELRPELASGSSKELASSRSSSSMSTSTASAGLTLSTIAPVSQSSAQPSTQSSSSLATSSATTSSTVSHTSS* | 495 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal5g4792 | 494 | ProSiteProfiles | Zinc finger C3H1-type profile. | 138 | 166 | IPR000571 | GO:0046872 | |
| Mal5g4792 | 494 | Gene3D | - | 312 | 398 | - | - | |
| Mal5g4792 | 494 | Gene3D | - | 45 | 124 | - | - | |
| Mal5g4792 | 494 | PANTHER | TRANSCRIPTION FACTOR C3H FAMILY-RELATED | 3 | 484 | - | - | |
| Mal5g4792 | 494 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Mal5g4792 | 494 | SUPERFAMILY | CCCH zinc finger | 95 | 120 | IPR036855 | GO:0046872 | |
| Mal5g4792 | 494 | SUPERFAMILY | CCCH zinc finger | 139 | 166 | IPR036855 | GO:0046872 | |
| Mal5g4792 | 494 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
| Mal5g4792 | 494 | Gene3D | - | 125 | 174 | - | - | |
| Mal5g4792 | 494 | MobiDBLite | consensus disorder prediction | 415 | 494 | - | - | |
| Mal5g4792 | 494 | MobiDBLite | consensus disorder prediction | 279 | 318 | - | - | |
| Mal5g4792 | 494 | SUPERFAMILY | CCCH zinc finger | 318 | 344 | IPR036855 | GO:0046872 | |
| Mal5g4792 | 494 | SMART | c3hfinal6 | 47 | 74 | IPR000571 | GO:0046872 | |
| Mal5g4792 | 494 | SMART | c3hfinal6 | 360 | 387 | IPR000571 | GO:0046872 | |
| Mal5g4792 | 494 | SMART | c3hfinal6 | 92 | 119 | IPR000571 | GO:0046872 | |
| Mal5g4792 | 494 | SMART | c3hfinal6 | 316 | 343 | IPR000571 | GO:0046872 | |
| Mal5g4792 | 494 | SMART | c3hfinal6 | 140 | 165 | IPR000571 | GO:0046872 | |
| Mal5g4792 | 494 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 141 | 165 | IPR000571 | GO:0046872 | |
| Mal5g4792 | 494 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 49 | 74 | IPR000571 | GO:0046872 | |
| Mal5g4792 | 494 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 95 | 119 | IPR000571 | GO:0046872 | |
| Mal5g4792 | 494 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 319 | 343 | IPR000571 | GO:0046872 | |
| Mal5g4792 | 494 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 361 | 386 | IPR000571 | GO:0046872 | |
| Mal5g4792 | 494 | MobiDBLite | consensus disorder prediction | 279 | 310 | - | - | |
| Mal5g4792 | 494 | PANTHER | PROTEIN PHOSPHATASE RELATED | 3 | 484 | - | - | |
| Mal5g4792 | 494 | ProSiteProfiles | Zinc finger C3H1-type profile. | 360 | 388 | IPR000571 | GO:0046872 | |
| Mal5g4792 | 494 | ProSiteProfiles | Zinc finger C3H1-type profile. | 92 | 120 | IPR000571 | GO:0046872 | |
| Mal5g4792 | 494 | SUPERFAMILY | CCCH zinc finger | 360 | 390 | IPR036855 | GO:0046872 | |
| Mal5g4792 | 494 | SUPERFAMILY | CCCH zinc finger | 49 | 75 | IPR036855 | GO:0046872 | |
| Mal5g4792 | 494 | ProSiteProfiles | Zinc finger C3H1-type profile. | 47 | 75 | IPR000571 | GO:0046872 | |
| Mal5g4792 | 494 | ProSiteProfiles | Zinc finger C3H1-type profile. | 316 | 344 | IPR000571 | GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal5g4792 | Mal-Chr5 | 121120298 | 121124423 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal5g4792 | 3 | 456 | C2H2 Transcription Factor Family | AT5G18550 | 54.894 | 6.10e-147 | 426 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Mal5g4792 | zf-CCCH | 1.1e-07 | CL0537 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal5g4792 | - | - | mtr:MTR_4g119280 | 804.668 |
Event-related genes