Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4773 ATGGGTAGAACTTCCAAATCTCACGTTTCAAGCGCCTCCAATTCTTCATCCTCCGAAGAAGAAGAGGTTGAGAACGTTAACGATCAGATCGATGAAGAAGATGAAGAGGAACTCGAAGCCGTTGCTCGTTCCGCTGACTCAGACGATGACGGTGACAACGCCGCCGACGAACCCGGCGTCGACGAAGAGGACGATAATCAGGATGAAGAGAATGTTAATCCTGAGATTAGTAAGCGTGAGAAAGCTAGGTTAAAGGAATTGGAACGGTTGAAGAAACAGAAGATTCAGGAGATATTAGATGCACAAAATGCATCTATTGATGCCTCTATGAACACTAAAGGAAAAGGACGATTGAAGTATCTGTTGCAGCAAACTGAGCTGTTTGCTCATTTTGCTAAAAGTGAACAATCTTCGTCTCAGAAGAAGACTAAGGGAAGGGGACGCCATGCATCAAAAATGACCGAGGAAGAGGAAGATGAAGAATACCTTAAAGAAGAAGAAGGAAGTTTAGGAAATACACGATTGGTTACTCAACCATCATGTATCCAAGGGAAAATGAGGGATTACCAACTTGCTGGGCTAAATTGGCTCATACGTCTGTATGAGAATGGAATAAATGGAATTTTAGCTGATGAAATGGGACTTGGCAAAACTTTACAAACTATATCTTTGTTGGGCTATTTACATGAGTTCAGAGGAATAACGGGTCCACATATGGTCGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGACGCTTTTGTCCTGTTTTACGGGCAGTGAAGTTCCTTGGTAGCCCTGATGAAAGGAAACATATAAAAGAGGAGTTATTGGTGGCGGGAAAGTTCGATGTGTGTGTGACAAGTTTTGAAATGGTAATCAAGGAGAAGTCTACATTCCGTCGATTTAGTTGGCGTTACGTTATTATTGATGAAGCCCATCGGATCAAGAATGAGAATTCCCTCCTGTCCAAAACAATGAGGGAATATAAAACAAACTACAGACTCCTGATAACTGGTACACCGCTACAGAACAATCTTCATGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAACTTCACAAAGTCCTCCGTCCATTTCTTCTGCGAAGGTTGAAGTCAGATGTTGAGAAAGGGTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGCATGTCCCAAATGCAGAAACAATATTATAAGGCATTACTACAGAAGGATCTTGAGGTTGTGAATGCTGGTGGAGAGCGGAAACGTCTCCTAAATATAGCAATGCAACTTCGTAAATGTTGCAATCACCCATATCTTTTCCAAGGGGCAGAACCTGGTCCTCCCTACACAACAGGAGATCATCTCATTACCAGTGCTGGCAAAATGGTTCTAATGGATAAATTACTTCCCAAACTAAAAGAGCGGGATTCTAGGGTCCTAATATTTTCACAGATGACTAGGCTGCTAGATATACTTGAAGATTATTTGATGTTTCGTGGGTACCAATACTGTCGGATAGATGGTAATACTGGTGGAGATGACCGTGACGCTTCTATTGAGGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTATTGTCTACTCGAGCTGGAGGTCTTGGCATCAATCTTGCTACTGCAGATGTTGTTATTCTTTATGATAGTGACTGGAACCCACAGGCTGACTTGCAAGCGCAAGATCGAGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCAGATTTTGCACCGAGTATACAATCGAGGAAAAGGTTATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTGGTAATTCAGCAAGGGAGATTAGCTGAGCAGAAGACTGTTAATAAAGATGATTTGCTTCAAATGGTTAGATTCGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACAATTACAGATGAAGATATCGACAGAATTATTGCCAAAGGAGAGGAATCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACTGAAGATGCAATCAAATTTAAGATGGATGACACTGCTGATTTGCTTGATTTTGATGATGAGAAGGACGAGGACAAAGTTGATTTCAAAAAAATTGTGAGTGAAAACTGGGTTGAGCCATCAAGAAGAGAACGGAAGCGAAATTACTCAGAGTCTGAATACTTCAAACAAACAATGCGCCAAGGTGGTCCTACTAAACCCAAAGAACCCCGAATTCCTAGAATGCCTCAATTGCATGATTTTCAGTTCTTCAACACACACAGGCTGAGTGAGCTGTATGAAAAGGAAGTTCGTTATCTAATGCAAGCACATCAGAAGAATCAGGTAAAAGACTCCATAGATGTTGATGAACCAGAAGAGGTGGGAGAGCCATTGACTGCAGAAGAGTCTGAAGAAAAAGAGCAATTGCTAGAGCAGGGATTTTCATCATGGAGCCGAAAAGATTTTAATACTTTCATTAGGGCATGTGAAAAATATGGCCGAAATGATATAAAAAGTATTGCTTCTGAGATGGAGGGAAAGACAGAAGAAGAAGTTGAAAGATATGCAGAAGTTTTCAAAGAGCGATACAAGGAATTGAATGATTATGATAGAATTATTAAAAACATTGAAAGAGGGGAGTCAAGAATAGCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCGTGGCTAGAGTTGAAGATACAATATGGACAAAACAAAGGGAAATTATACAATGAAGAATGTGATCGATTCATGATATGCATGACTCACAAGCTTGGCTATGGTAATTGGGATGAATTGAAAGCAGCATTTCGAATGTCACCCTTGTTTCGTTTTGATTGGTTTGTAAAGTCACGCACAACTCAGGAGCTAACAAGGAGATGTGACACCCTCATTCGCTTGGTAGAGAAGGAAAATCAAGAATACGATGAAAGAGAGAGACAAGCTCGTAAAGAAAAGAAACTTGCCACCAAGAGTACGACTCCATCAAAGCGTGTCTTGCCAAGACAGGCAGAAAGTCCATCTCTGAAGAAGCGGAAGCAGTTAACTATGGATTACTATGTAAGCTCGGGGAAGAGAAAAAAATAA 3186 0.4065 MGRTSKSHVSSASNSSSSEEEEVENVNDQIDEEDEEELEAVARSADSDDDGDNAADEPGVDEEDDNQDEENVNPEISKREKARLKELERLKKQKIQEILDAQNASIDASMNTKGKGRLKYLLQQTELFAHFAKSEQSSSQKKTKGRGRHASKMTEEEEDEEYLKEEEGSLGNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGSPDERKHIKEELLVAGKFDVCVTSFEMVIKEKSTFRRFSWRYVIIDEAHRIKNENSLLSKTMREYKTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLMDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEESTAELDAKMKKFTEDAIKFKMDDTADLLDFDDEKDEDKVDFKKIVSENWVEPSRRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTHRLSELYEKEVRYLMQAHQKNQVKDSIDVDEPEEVGEPLTAEESEEKEQLLEQGFSSWSRKDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAEVFKERYKELNDYDRIIKNIERGESRIARKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMTHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLATKSTTPSKRVLPRQAESPSLKKRKQLTMDYYVSSGKRKK* 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4773 1061 MobiDBLite consensus disorder prediction 1008 1043 - -
Mal5g4773 1061 Gene3D - 837 891 - -
Mal5g4773 1061 CDD DEXHc_SMARCA1_SMARCA5 183 403 IPR044754 GO:0005524
Mal5g4773 1061 Gene3D - 187 402 IPR038718 -
Mal5g4773 1061 SUPERFAMILY Homeodomain-like 892 1014 IPR009057 -
Mal5g4773 1061 PANTHER SNF2/RAD54 HELICASE FAMILY 11 1061 - -
Mal5g4773 1061 SMART sant 837 886 IPR001005 -
Mal5g4773 1061 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 198 363 IPR014001 -
Mal5g4773 1061 Coils Coil 16 36 - -
Mal5g4773 1061 Gene3D ISWI, HAND domain 738 836 IPR036306 GO:0003677|GO:0006338|GO:0031491
Mal5g4773 1061 Gene3D - 407 699 IPR027417 -
Mal5g4773 1061 MobiDBLite consensus disorder prediction 50 70 - -
Mal5g4773 1061 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 491 642 IPR001650 -
Mal5g4773 1061 CDD SANT 840 884 IPR001005 -
Mal5g4773 1061 CDD SF2_C_SNF 487 612 - -
Mal5g4773 1061 Pfam SLIDE 894 1004 IPR015195 GO:0003677|GO:0005634|GO:0006338
Mal5g4773 1061 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 11 1061 - -
Mal5g4773 1061 MobiDBLite consensus disorder prediction 1 81 - -
Mal5g4773 1061 Coils Coil 77 104 - -
Mal5g4773 1061 Pfam Helicase conserved C-terminal domain 491 601 IPR001650 -
Mal5g4773 1061 Coils Coil 987 1021 - -
Mal5g4773 1061 MobiDBLite consensus disorder prediction 807 829 - -
Mal5g4773 1061 Pfam SNF2-related domain 199 466 IPR000330 GO:0005524|GO:0140658
Mal5g4773 1061 SMART helicmild6 517 601 IPR001650 -
Mal5g4773 1061 MobiDBLite consensus disorder prediction 1 20 - -
Mal5g4773 1061 Gene3D - 925 1028 - -
Mal5g4773 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 401 IPR027417 -
Mal5g4773 1061 MobiDBLite consensus disorder prediction 1008 1025 - -
Mal5g4773 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 403 683 IPR027417 -
Mal5g4773 1061 MobiDBLite consensus disorder prediction 21 43 - -
Mal5g4773 1061 ProSiteProfiles SANT domain profile. 836 888 IPR017884 -
Mal5g4773 1061 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 749 839 IPR036306 GO:0003677|GO:0006338|GO:0031491
Mal5g4773 1061 Pfam HAND 750 833 IPR015194 GO:0003677|GO:0006338|GO:0031491
Mal5g4773 1061 Gene3D iswi atpase 892 924 - -
Mal5g4773 1061 MobiDBLite consensus disorder prediction 745 770 - -
Mal5g4773 1061 MobiDBLite consensus disorder prediction 132 169 - -
Mal5g4773 1061 SMART ultradead3 182 374 IPR014001 -
Mal5g4773 1061 SUPERFAMILY Homeodomain-like 840 890 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4773 Mal-Chr5 120861403 120869794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4773 207 628 RAD5 or RAD16-like Gene Family AT1G02670 26.931 2.18e-42 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal5g4773 SNF2_N 2.2e-73 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4773 K11654 - gmx:100791510 1841.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4773 5 120861403 120869794 Mal5g4773 5 120861403 120869794 ECH
Mal5g4773 5 120861403 120869794 Mal4g4307 4 120446432 120458792 PCT