Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4756 ATGGGTAGGTATCGAAGTCGTAGCAGAAGCTACAGCCCTCGCCGGCGTAGCAGAACTCCACCACCTCGTGGTCGCAAGCGTTACGAAGATGATCGCTATCCTGACAATAGGTCTCGCAGAGACCGTCGTTCTCCTCTCCCTTCTGGATTACTCGTTCGTAATCTCCCCCTTGATGCAAGGCCTGAAGATCTTAAGGGACCATTTGAGCGCTATGGTCCTGTCAAGGATGTTTACCTTCCTAGAAACTATTACACTGGTGAGCCTCGTGGCTTTGGATTTGTGAAATACCGACACGGTGAAGATGCAGCAGAGGCAAAGCAACAACTTAATCACACAATCATTGGCGGACGTGAAATTAGAATTGTGTTTGCCGAGGAAAATAGGAAAACCCCTCAAGAAATGCGGGTTACTTCTCATGGAAGTGGTCGAAATGGAGGTGGTAGTAGAAGGAGAGCTCGATCAAGATCCCCACGACGCAGCCGCTATCGATCCTACTCTCGGTCTCCATCACCAGCCAGGGATGATTCAAGGGATGACAGGGGTAAGGATGATTATTCTCCAAAACGATCAAGATCGTATTCTAGGTCTGTCTCTCCTGGTGACGGGAAGGATGACAGGAGGTCCCCTCGTGCCAAGGATGACAAGAGGTCCCCTCGTTCCAAGGATGACAGGAGGTCCCCGCGTGCCAAGGACGACAGGAGATTCCCGCGTGCCAAGGAGAATGGCAGGAGTCCAAATGATAAGAATGATCAGGCACCTAGCAGATCTCCGAGCCCCAGGGGCAATGATCGCAGTCCTTCAAGGTCTCGTTCGCGGTCATACAGTCCGCGTTGA 834 0.518 MGRYRSRSRSYSPRRRSRTPPPRGRKRYEDDRYPDNRSRRDRRSPLPSGLLVRNLPLDARPEDLKGPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRHGEDAAEAKQQLNHTIIGGREIRIVFAEENRKTPQEMRVTSHGSGRNGGGSRRRARSRSPRRSRYRSYSRSPSPARDDSRDDRGKDDYSPKRSRSYSRSVSPGDGKDDRRSPRAKDDKRSPRSKDDRRSPRAKDDRRFPRAKENGRSPNDKNDQAPSRSPSPRGNDRSPSRSRSRSYSPR* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4756 277 MobiDBLite consensus disorder prediction 23 46 - -
Mal5g4756 277 SUPERFAMILY RNA-binding domain, RBD 50 153 IPR035979 GO:0003676
Mal5g4756 277 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 276 - -
Mal5g4756 277 MobiDBLite consensus disorder prediction 198 246 - -
Mal5g4756 277 MobiDBLite consensus disorder prediction 126 277 - -
Mal5g4756 277 MobiDBLite consensus disorder prediction 1 51 - -
Mal5g4756 277 SMART rrm1_1 49 122 IPR000504 GO:0003723
Mal5g4756 277 MobiDBLite consensus disorder prediction 168 190 - -
Mal5g4756 277 MobiDBLite consensus disorder prediction 146 162 - -
Mal5g4756 277 Gene3D - 3 137 IPR012677 -
Mal5g4756 277 MobiDBLite consensus disorder prediction 1 22 - -
Mal5g4756 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 120 IPR000504 GO:0003723
Mal5g4756 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 126 IPR000504 GO:0003723
Mal5g4756 277 SMART rrm2_1 49 122 IPR003954 GO:0003676
Mal5g4756 277 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28 1 276 - -
Mal5g4756 277 MobiDBLite consensus disorder prediction 247 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4756 Mal-Chr5 120695860 120699710 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4756 52 110 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 7.31e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4756 K12900 - gmx:100788749 241.891