Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4704 ATGGCTTCTTCAGATGGAAACAAGAAATCAACAAAACGTAAGAGAAACATTGAAGTCAAGAAAGAAGAACAATGTAACAACTGTGATGCCTTCTCAAAACGCAAACTAGGTCTCTTCAACAAAGTCACAGAACTATCCATTCTATGCAATGCAAAAACTGCAATGTTCATCACTTCACCAAACGCAAAACTCTATGCATGTGGATACCCTAACCCCGATACCGTCTTTAAACACTTTCTTGGTAAGGAAAACTCGCTCATCGAAACTGAAAAAAGGAAGAAGCAAGATGAGGGCACAATTGAAACGTTAAGGCTTCAACATGAGGCAATTCAAGAACAACTGAATGAAGAGAAGAAAAAATTACAAGGTGTAATAGAGACAAACAAGAGTAGTTCATGTTTTCCTTCTTGGTGGGTTCAATCAATTGATGATATGGATTTGGAATCTCTTGAGCAATTTAAGAGTGCTTTGGAAAATTTGAAGCTTAATTTAGTTGCATCCTTGGAAGGGAAAAAGAATGAGAGGTGTTAG 531 0.371 MASSDGNKKSTKRKRNIEVKKEEQCNNCDAFSKRKLGLFNKVTELSILCNAKTAMFITSPNAKLYACGYPNPDTVFKHFLGKENSLIETEKRKKQDEGTIETLRLQHEAIQEQLNEEKKKLQGVIETNKSSSCFPSWWVQSIDDMDLESLEQFKSALENLKLNLVASLEGKKNERC* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4704 176 Gene3D - 24 108 IPR036879 GO:0003677|GO:0046983
Mal5g4704 176 SMART madsneu2 10 70 IPR002100 GO:0003677|GO:0046983
Mal5g4704 176 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 9 172 - -
Mal5g4704 176 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 30 66 IPR002100 GO:0003677|GO:0046983
Mal5g4704 176 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Mal5g4704 176 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Mal5g4704 176 PANTHER MADS BOX PROTEIN 9 172 - -
Mal5g4704 176 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Mal5g4704 176 Coils Coil 100 127 - -
Mal5g4704 176 SUPERFAMILY SRF-like 20 81 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4704 Mal-Chr5 119981099 119981629 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4704 8 161 Type I MADS-box Gene Family AT5G60440 32.704 1.08e-19 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal5g4704 SRF-TF 9.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4704 - - cam:101507050 187.963