Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4670 ATGACTACTTCGTCTGCATTACGGTCAAAAAAGCGACCGAGGAAACCTGAGGAAGAAGAAAAAACAACTACAACAATTTCTTCGTCTCCATTACAGTCAAAAGATCGACGGAGAGAATATGAGGAAACCAATAAATCAACTTCTGGTATGTATTTTGAAGCCTCTAGTTCCATTTCTGTTAAAAAAGCTACTGTTACTGCAGTATCAAGATCAACATCAAAGGTAAATGAGAAACATGTGAGTCAATCTGAATCAGAAGTTACTAATTTAGTGGGTAGTGGTAAAAGGGGAAGGAATTCACTTACTTCTCAGTTGATAAAGAGTGGAGTTTTGGTTTCTGGGACTAATGTTTCCTGTAAAGGTCGTAACAAAGTTATCAAAAGAGGGAGAATATTTTGTGAAGGAATAGTTTGTGATTGTTGTCAGCAGAGCTTCAGTGTCACCAAATTCGAGGCTCATGCTGGTTGTACGAAAAAAAGACCAGCCGAAACTATCAAGTTGGAAGACGGAAGGTCATTGTCAGAATGTCGAAGCCAAGCTGTGAGGTCACCCGATCAAAATGGAAAAACAAATAACGATGCTTGTTCTGTTTGTGGTTTTGGAGGTGAAATAGTATTATGTGACCAATGCCCTTTTGCATTCCACAAGGAATGTTTAGGTTCTGAGCAAGTTTTGGATGGTGATTGGTTCTGTCCAACTTGCCGTTGCAAAATATGCAACAAACCCAAATGTGAAGAAGAATTTGCAGATGATGATAACAATCTTCTTGCTTGTGTTCAATGTGAAAAAAAATTCCACTCTGGGTGTGTGAAGGCTAAAGGGTTTGGATCAAGTCCCATTGAGAGCATTGATAAAAAGAATTGGTTTTGCAGTGAAGTTTGTGGGAACATGTCCGTAGATCTAAAGAAGCTATTAGGGAAACCAATTAAGGTTGCAGCTAAAGATAATACAACTTGGACATTGTTGAAGAATGGTGGAGATATTACTTTTATTCAAAAGATGTGTAAGTTGAAGTTGAAGGCGGCTCTTCGTGTATTGCATCAGAGTTTTGGTAAAACTAGTCATGATTTATCACGAAGAGATTTGACTAAAGATGTTATTTTTAGTAGATACTCGAAAGATAAACGTTTCAACTTTCATGGTTTCTATACTGTGATTTTGGAGAAAAATGATGAAGTCATTTCTGTGGCAACCGTAAGGATTTATGGGAAAAAGGTTGCAGAGATAGTGTTTGTGGCTACCAAGAAACAATATCGACGAGAAGGAATGTGTCGTTTGTTGATGGGTGAGCTTGAGAAACAATTGATTCGCTTAGGAGTTGAGAGCTTGGTATTGCATTCATCAAAGGAGGCTCTAAACACTTGGACCCAAAATTTTGGTTTTGCTGAGATGACGGTTACACACAAGCGTGAATTTATTGATTATAATTTCTTTGAATTTCAAAACATTGTCATGTGCCTTAAAAGACTTATACGGCCTTGCAATGCTTGA 1491 0.3776 MTTSSALRSKKRPRKPEEEEKTTTTISSSPLQSKDRRREYEETNKSTSGMYFEASSSISVKKATVTAVSRSTSKVNEKHVSQSESEVTNLVGSGKRGRNSLTSQLIKSGVLVSGTNVSCKGRNKVIKRGRIFCEGIVCDCCQQSFSVTKFEAHAGCTKKRPAETIKLEDGRSLSECRSQAVRSPDQNGKTNNDACSVCGFGGEIVLCDQCPFAFHKECLGSEQVLDGDWFCPTCRCKICNKPKCEEEFADDDNNLLACVQCEKKFHSGCVKAKGFGSSPIESIDKKNWFCSEVCGNMSVDLKKLLGKPIKVAAKDNTTWTLLKNGGDITFIQKMCKLKLKAALRVLHQSFGKTSHDLSRRDLTKDVIFSRYSKDKRFNFHGFYTVILEKNDEVISVATVRIYGKKVAEIVFVATKKQYRREGMCRLLMGELEKQLIRLGVESLVLHSSKEALNTWTQNFGFAEMTVTHKREFIDYNFFEFQNIVMCLKRLIRPCNA* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4670 496 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 297 IPR013083 -
Mal5g4670 496 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 22 493 - -
Mal5g4670 496 CDD NAT_SF 385 446 - -
Mal5g4670 496 SUPERFAMILY FYVE/PHD zinc finger 179 237 IPR011011 -
Mal5g4670 496 ProSiteProfiles Zinc finger PHD-type profile. 192 237 IPR019787 -
Mal5g4670 496 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 329 490 IPR000182 GO:0016407
Mal5g4670 496 SUPERFAMILY FYVE/PHD zinc finger 236 291 IPR011011 -
Mal5g4670 496 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 22 493 - -
Mal5g4670 496 Pfam PHD-finger 195 237 IPR019787 -
Mal5g4670 496 Pfam Acetyltransferase (GNAT) family 367 461 IPR000182 GO:0016407
Mal5g4670 496 MobiDBLite consensus disorder prediction 1 46 - -
Mal5g4670 496 Gene3D - 333 477 - -
Mal5g4670 496 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 340 477 IPR016181 -
Mal5g4670 496 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 235 IPR013083 -
Mal5g4670 496 Pfam Tify domain binding domain 129 179 IPR032308 -
Mal5g4670 496 SMART PHD_3 194 235 IPR001965 -
Mal5g4670 496 SMART PHD_3 236 294 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4670 Mal-Chr5 119530498 119531988 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4670 93 433 PHD Transcription Factor Family AT5G58610 40.496 1.99e-76 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal5g4670 Acetyltransf_1 8e-09 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4670 - - mtr:MTR_3g103120 535.413