Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4665 ATGCCGGACGGAGAATCCTCCACCGCGGCAACCGTTCACCTTCCGCCGGAGACCTCCGATCATGGAAAGACTTTAACTCCTTCCGTTCAGTCTTCCCTAGTCAAAAATCATGATGTCACCGTCAAAAAAGATCCCACCAAAATTGCTAGAAAGTATCAATTGGACTTGTGCAAAAAAGCTACGGAGGAAAATACTATTGTTTATCTGGGAACAGGATGTGGGAAGACTCACATTGCTGTGCTGCTCATGCATGAGATGAGACATTTGATAAAGAAGCCGAACAAGGATGTATGCGTCTTTCTTGCACCTACCGTTGCTCTAGTTCATCAGCAAGCGAAGGTTATATCTGACTCTACTGATTTTGAAGTTGGAACTTACTGTGGGAGTTCCAAGGGCTCAAAATCTCATCATCACTGGGAGGAGGAGATTGAACAGAATGAGGTTCTTGTCATGACCCCACAAATATTACTTTACAACTTATCTCATTGTTTCATCAAGATGGAGATGATCGCACTTTTGATTTTCGATGAATGCCATCATGCTCAAGTCAAAAGCAGCCATCCTTATGCACAAATCATGAAAGTCTTCTACAAAAATAATTCCACAAAGGTGCCCCGTATATTTGGCATGACTGCTTCCCCTGTTGTAGGAAAAGGTGCTTCTACTGAAGCAAATCTACCAAAAAGCATCAATAGTCTTGAACAAATGCTTGATGCTAAGGTATACTCAGTTGACGAAGAGGCATTGCAATCTTTTGTGACCAGTCCTAAAGTTCGTATATATTGTTATAGTTCGACTGTAAATATGGAAACTAGCTTGTACTGGAAAGTTGAGGAGATTAAATGCCAGTGCATAGAAACCCTTGGTAGGAGTATAGAAGATCACCAGAAACGGATGAGCACAAAGAAACTTCTCAACCGGGTGCATGATAATGTGGTCTTTTGTCTTAGAAGTCTTGGCATTTGGGGAGCGTTGCAGGCTACTCGTATTCTTTTGAGCGGTGATCATTCTGAGAGGCGTGCATTAGTTGAGGCAGAAGGAATTTCAAGCGATGAGTCTGTATGTGATAAATATCTTGCAAAGGCTGCTGACCTATTTACTTCCAAATGCATGTCAGGTGACAGTGTATCTGATCCATCTTCTATGGAAATATTAAAAGAGCCCTTTTTCTCAGCAAAGCTATTACGCCTCATTGGGATACTGACTAGTTTCAGGTTGCAACAGAACATGAAATGTATAGTTTTTGTGAATAGAATTGTGACTGCAAGATCTCTGTCATACATACTACAAAAGCTCGAGCTTCTAAGGCAATGGAAGAGTGATTTTCTCGTAGGAGTCCATTCTGGAGTTAAGATTATGTCACGGAGGACCATGAACACAATTGTTGAGAAGTTTCGCTCTGGAGAGTTGAATTTATTAGTTGCCACCAGTGTGGGTGAAGAAGGACTTGATATTCAGACATGTTGCCTTGTCATACGGTTCGATCTTCCAGAAACTGTTGCCAGCTTTATACAGTCCAGAGGCCGTGCACGCATGCCTCGTTCAGAATATGCATTTTTGGTTGACAGTGGAAATGAGAAGGAGTTAGCCATAATTGATGGTTTTGAGAAAGATGAGTCCCGAATGAATACGGAAATTATTGACCGAACATCCAGTGAGACATACGACATCCCTGTGGAAAAAACATTCAGAGTTGATTCATCTGGTGCCTCAGTCAGTTCGGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTTCTTTGATCCCCGGCCAAATTTCTTTTACTTTGATGATTTAGGAGGAACTGTTTGCCAAATAACTTTGCCTTCCAATGCTCCTATACACCAAATTGTTGGTACGCCACAGTTGTCTATGGAAGCTGCAAAAAGAGATGCTTGCCTGAAAGCAATTGAAGAACTGCATAAGTTAGGTGCTTTGAATGATTGTCTTTTGCCAAGGCAAAATGATGCAGAGCCAGAAAAGGTTTTGGGCTCCTCTGATTCAGATGAGTATGCAGATGACATTTCAAGAGGAGAATTACATGAGATGCGAGTTCCTTCTGTCTTTGGACGGTCATGGAGAAATGAGGAGAAAACTGTCCGTCTCATCTCTTACTACATTAAATTTTCCCCCACTCCGGAGGATAGGGTCTATAAAAATTTCGGTTTATTCATCATGACTCGTCTTCCAATGGAGGCAGAGAAACTGGAACTTGATCTTCATCTTGCTCATGGTAGATCCGTGATGACAAAATTTATTCCATTTGGAGTTGTAGAATTCAACAAAGATGAGATTAAGATGGCGGAGAATTTTCAAGAAATGTTCCTCAAAATTATTCTTGATAGATTCGAATTTGTTTCCAAGTTTGTAGAATTGGGTGCTGAGTCTCACACAAGCACATCGACCTTCTACCTTTTGCTTCCAGTCATATTGAAAGAATATGATGACATGATGAAAGTAGACTGGAAGACAGTGAAGAGATGCCTTTGTTCACCAATTTTCAGGCATCCAGAAGATACTTCGGATAAAATAGTTACCTCTTTGGATAATCATCTGCTACTTGCCAATGGTTACCAAAGTATTACAGATGTTGAGAATAGTTTAGTGTATGTTCCACATACAAAATTCTTTTATTTTGTCGCAAATATTATCTATGATAAGAATGGATTCAGTCCTCATAAAGATTCAGAAACTTCAAGCTTTGTGGAGCACTTAAATGAAAAGTCCATTCATCTCAAACGCCCCGAACAACCACTTCTGCATGCAAAGCAACTCTTCAATTTGCACAACCTACTGCACAATCGAAAGAATGCAGATGATACTGAACCACATGAGCTGCAGGAACACTTAGTTTATTTGCCTCCTGAGGTATGCGAACTGAAAATAGTAGGCTTTTCAAAGGATATCGGTAGTTCCATATCGTTGCTACCTTCAATTATGCATCGTCTTGGAAACTTGCTGGTTGCCATTGAACTGAAGCACCAGCTATCTTCCTCCTTCCCAGAGGCAGCTGAAATTAGTGCCCATAGGGTTCTAGAGGCTCTTACCACCGAGAAGTGTCAGGAGCGCTTTTCCCTGGAAAGACTTGAAGTGCTTGGTGACGCTTTCCTTAAATTTGCTGTTGCACGACATTTTTTTCTGTTGCATGACAGCTTTCATGAAGGAGATCTTACCAGCAAGCGTTCCAGTGTTGTAAATAACTCCAATTTGTTCAAGTTGGCTATTAGGCGCAATTTGCAGGTTTATATATGTGACCAGGCACTTGATCCCATCCAGTTCTATGCATTCGGCCGTCCTTGCCCAAGAGTTTGTACCGGGGAAACTGAAGACAGCATCCACTTATGTTTAGATTCTGGCGAGGAGAAAAGGAGTGCAACTCAACTCCGTTGTAATAAAAATCACCATTGGTTGCACAGGAAAACAATTTCTGATGTGGTTGAAGCTCTTGTGGGGGCATTCATAGTCGACAGTGGCTTCAAAGCTGCAATTGCCTTTCTTACGTGGATTGGCATACAAGTAAATTTTGAAGCCTCGCAAGTTGTTAATATTTGCGCTGGAAGTGTTGGCTATTTTCCTCTTTCTGCTGAAGTAGACATTCCCTCCCTTGAAGGCAAGTTAGGACATCACTTTGTTCATAAGGGTCTACTTCTTCAGGCATTTGTACATCCCTCATATAATAAGCATGGAGGAGGCTGTTATCAGAGACTGGAGTTTCTTGGAGATGCTGTCTTGGATTATTTGATTACGTCGTATCTATACTCAGCTTATCCCAAACTAAAGCCTGGCCAACTGACGGACCTGAGATCCTTGTCTGTCAATAATAAGGCATTTGCCTGTGTGGCAGTAGATCGCTGTTTTCATGAATTTCTTCTATGTGATTCAAGTCCTCTGATCGGGGCAATAAAAAAGTATGCGGACTATATTAGAAGACCTGTATCACACCATGACAATAATGGAGGGCCAAAAAGTCCCAAGGCCCTAGGTGATTTGGTGGAATCTTGTGTTGGTGCTGTTCTTCTTGATTCAGGATTTGATTTGAACAAAGTATGGAAGATTATGACTTCGTTTTTAGATCCAATCATGAAATTCTCATCAAGTTTACAGCTTAGCCCTGTTAGGGATTTACAAGAACTTTGCCAGTCTCATAATTTGGAATTGGAGCTTCTGCCATCAAAACTATCTAAAACTTTTTCAGTTGAAGTCAAAGTGACTGGAGAGGGTGTATGTGAAAAAGTTTCTGTGACCAGCCAAAATAAAAAAGAAGCTTCTAGAATTGCTTCACAACTACTATTTTCAAAGTTGAAGGCTCAAGGCTTGAAACTGAGGACAAAAACTTTGGAAGAAGTTCTGAAATCAACATTTAAGACGGAACCAAAACTCATTGGCTACGATGAAACTCCCATTGATGTTACGGATACTTCTATCATCGGAGAAGTAATGGCTAATGGAGACCTATGCAACAAGTCTAATCCAGAAATCCGCCCTATTCGGGAGGTATCAGATGCATCCTCCTCGTGTGTTATATCTGTCGCCCAACGGCTTCAATCTTCTTCTAAAGGAAAGCATAGCGAAACCATTCAAAATCGTGATTGTGGCAGTGAGTCATCAAGGACAGTAACAGCAAGATCGCGATTGTATGAATTATGTGCTGCTAATTGCTGGAAACCTCCTTCATTTGAATGCTGCAACGAAGAGGGACCGGACCACCTTAAGTTATTCACTTGCATGGTGACAATGGAGATAGAAGAGGCCCCAAATAAGGTTTTTGAGTTTATTGGAGAACCTCTACCAAAGAAGAAAGATGCAGCGGATAGTGCGGCTGAGGCTGCATTTTGGTTCCTGAAACAGGAAGGTTACCTGCATAATGCTAAGGGTAATTGA 4902 0.4129 MPDGESSTAATVHLPPETSDHGKTLTPSVQSSLVKNHDVTVKKDPTKIARKYQLDLCKKATEENTIVYLGTGCGKTHIAVLLMHEMRHLIKKPNKDVCVFLAPTVALVHQQAKVISDSTDFEVGTYCGSSKGSKSHHHWEEEIEQNEVLVMTPQILLYNLSHCFIKMEMIALLIFDECHHAQVKSSHPYAQIMKVFYKNNSTKVPRIFGMTASPVVGKGASTEANLPKSINSLEQMLDAKVYSVDEEALQSFVTSPKVRIYCYSSTVNMETSLYWKVEEIKCQCIETLGRSIEDHQKRMSTKKLLNRVHDNVVFCLRSLGIWGALQATRILLSGDHSERRALVEAEGISSDESVCDKYLAKAADLFTSKCMSGDSVSDPSSMEILKEPFFSAKLLRLIGILTSFRLQQNMKCIVFVNRIVTARSLSYILQKLELLRQWKSDFLVGVHSGVKIMSRRTMNTIVEKFRSGELNLLVATSVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPRSEYAFLVDSGNEKELAIIDGFEKDESRMNTEIIDRTSSETYDIPVEKTFRVDSSGASVSSGYSISLLHQYCSKLPHDEFFDPRPNFFYFDDLGGTVCQITLPSNAPIHQIVGTPQLSMEAAKRDACLKAIEELHKLGALNDCLLPRQNDAEPEKVLGSSDSDEYADDISRGELHEMRVPSVFGRSWRNEEKTVRLISYYIKFSPTPEDRVYKNFGLFIMTRLPMEAEKLELDLHLAHGRSVMTKFIPFGVVEFNKDEIKMAENFQEMFLKIILDRFEFVSKFVELGAESHTSTSTFYLLLPVILKEYDDMMKVDWKTVKRCLCSPIFRHPEDTSDKIVTSLDNHLLLANGYQSITDVENSLVYVPHTKFFYFVANIIYDKNGFSPHKDSETSSFVEHLNEKSIHLKRPEQPLLHAKQLFNLHNLLHNRKNADDTEPHELQEHLVYLPPEVCELKIVGFSKDIGSSISLLPSIMHRLGNLLVAIELKHQLSSSFPEAAEISAHRVLEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLLHDSFHEGDLTSKRSSVVNNSNLFKLAIRRNLQVYICDQALDPIQFYAFGRPCPRVCTGETEDSIHLCLDSGEEKRSATQLRCNKNHHWLHRKTISDVVEALVGAFIVDSGFKAAIAFLTWIGIQVNFEASQVVNICAGSVGYFPLSAEVDIPSLEGKLGHHFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRCFHEFLLCDSSPLIGAIKKYADYIRRPVSHHDNNGGPKSPKALGDLVESCVGAVLLDSGFDLNKVWKIMTSFLDPIMKFSSSLQLSPVRDLQELCQSHNLELELLPSKLSKTFSVEVKVTGEGVCEKVSVTSQNKKEASRIASQLLFSKLKAQGLKLRTKTLEEVLKSTFKTEPKLIGYDETPIDVTDTSIIGEVMANGDLCNKSNPEIRPIREVSDASSSCVISVAQRLQSSSKGKHSETIQNRDCGSESSRTVTARSRLYELCAANCWKPPSFECCNEEGPDHLKLFTCMVTMEIEEAPNKVFEFIGEPLPKKKDAADSAAEAAFWFLKQEGYLHNAKGN* 1634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4665 1633 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1548 1621 - -
Mal5g4665 1633 SUPERFAMILY RNase III domain-like 1016 1179 IPR036389 GO:0004525|GO:0006396
Mal5g4665 1633 ProSitePatterns Ribonuclease III family signature. 1241 1249 IPR000999 GO:0004525|GO:0006396
Mal5g4665 1633 SMART PAZ_2_a_3 845 995 IPR003100 GO:0005515
Mal5g4665 1633 Pfam PAZ domain 870 990 IPR003100 GO:0005515
Mal5g4665 1633 CDD RIBOc 1019 1175 IPR000999 GO:0004525|GO:0006396
Mal5g4665 1633 Gene3D paz domain 865 967 - -
Mal5g4665 1633 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 232 IPR014001 -
Mal5g4665 1633 Pfam Helicase conserved C-terminal domain 399 511 IPR001650 -
Mal5g4665 1633 PANTHER DICER-RELATED 45 1625 - -
Mal5g4665 1633 Pfam Type III restriction enzyme, res subunit 58 214 IPR006935 GO:0003677|GO:0005524|GO:0016787
Mal5g4665 1633 Pfam Ribonuclease III domain 1034 1165 IPR000999 GO:0004525|GO:0006396
Mal5g4665 1633 Pfam Ribonuclease III domain 1241 1350 IPR000999 GO:0004525|GO:0006396
Mal5g4665 1633 Gene3D - 1376 1444 - -
Mal5g4665 1633 ProSiteProfiles Ribonuclease III family domain profile. 983 1165 IPR000999 GO:0004525|GO:0006396
Mal5g4665 1633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 528 IPR027417 -
Mal5g4665 1633 SUPERFAMILY dsRNA-binding domain-like 1547 1627 - -
Mal5g4665 1633 MobiDBLite consensus disorder prediction 1 31 - -
Mal5g4665 1633 CDD RIBOc 1222 1372 IPR000999 GO:0004525|GO:0006396
Mal5g4665 1633 SMART ultradead3 45 247 IPR014001 -
Mal5g4665 1633 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1377 1443 IPR014720 -
Mal5g4665 1633 SMART riboneu5 1221 1373 IPR000999 GO:0004525|GO:0006396
Mal5g4665 1633 SMART riboneu5 1016 1185 IPR000999 GO:0004525|GO:0006396
Mal5g4665 1633 Gene3D Dicer dimerisation domain 573 668 IPR038248 -
Mal5g4665 1633 Gene3D Ribonuclease III domain 1009 1176 IPR036389 GO:0004525|GO:0006396
Mal5g4665 1633 CDD DEXHc_dicer 47 244 - -
Mal5g4665 1633 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 577 667 IPR005034 GO:0016891
Mal5g4665 1633 SMART DRBM_3 1378 1442 IPR014720 -
Mal5g4665 1633 SMART DRBM_3 1548 1622 IPR014720 -
Mal5g4665 1633 Gene3D Ribonuclease III domain 1203 1375 IPR036389 GO:0004525|GO:0006396
Mal5g4665 1633 SMART helicmild6 430 513 IPR001650 -
Mal5g4665 1633 SUPERFAMILY RNase III domain-like 1205 1369 IPR036389 GO:0004525|GO:0006396
Mal5g4665 1633 Gene3D - 386 549 IPR027417 -
Mal5g4665 1633 Pfam Dicer dimerisation domain 577 662 - -
Mal5g4665 1633 ProSiteProfiles Ribonuclease III family domain profile. 1206 1350 IPR000999 GO:0004525|GO:0006396
Mal5g4665 1633 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 393 550 IPR001650 -
Mal5g4665 1633 Gene3D - 1554 1623 - -
Mal5g4665 1633 Gene3D - 49 303 IPR027417 -
Mal5g4665 1633 PANTHER DICER-LIKE PROTEIN 4 45 1625 - -
Mal5g4665 1633 SUPERFAMILY dsRNA-binding domain-like 1332 1442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4665 Mal-Chr5 119445303 119466077 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4665 411 543 Eukaryotic Initiation Factors Gene Family AT3G19760 30.435 1.64e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4665 K11592 - gmx:100818702 2502.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4665 5 119445303 119466077 Mal5g4665 5 119445303 119466077 ECH