Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4652 ATGGCTTTTCACGAGCATCTGCAACAAGAAATAGCTTTCCAACGTTTCACGGAAGAAGAAGAAGCTGATGAAGAGAGAGTATCATGGCTTAACAACAACAACAACAACGTAAACGCGCGTCAACAGAATTTCATGCAAATGGAACCAGAAAGAAGAGAGAAAAGCATGGATCGGAACCACCAGAGTGACAACAACTGCGAAACCGAGGAGTTAAGGGAATACAAAGCAGAGATATTAGGACATCCACTTTATGATCAATTGTTATCTGCTCATGTTTCGTGTCTTAGAATTGCAACTCCAGTGGATCAGCTTCCGAGGATTGATGCTCAACTTCAACAGTCACAACGTGTTCTTCAAAAATATTCTTCTGTTGGAATTGGAAATATGGATCCCAAGGACCTTGATCACTTTATGACGCATTATGTTCTTTTGCTGTGTGCCTTCAAAGAACAATTGCAACAACATGTCCGTGTTCATGCCATGGAGGCTGTGATGGCTTGTTGGGATCTCGAGCAGTCTCTGCAAAGCTTGACAGGTGTATCTTCAGGTGAAGGAACAGGAGCAACAATGTCAGACGATGAAGAGGAGCAGGCAGAAAGTAACGCCAGGTTATACAACGAAGGAAGCAGCCTTGATGGCGTTGATACTCTTGGCTTTGGTCCTCTTGTCCCCACTGAAACTGAAAGGTCTTTGATGGAACGAGTTAGGCTTGAGTTGAAGCATGAGCTAAAACAGGGTTACAAGGAGAAAATTGTAGATGTAAGAGAAGAGATTCTACGAAAGAGAAGAGCGGGGAAGCTCCCAGGGGACACCACCTCCCTTTTGAAAGCTTGGTGGCAATCACATTCTAAATGGCCCTATCCTACTGAGGAAGACAAAGCTAGATTGGTGCAGGAAACAGGGTTGCAATTAAAGCAGATAAACAATTGGTTCATCAATCAAAGGAAAAGGAACTGGCACGCTAACTCCCCATCCTCTAGTAACTCCAAAACCAAGCGCAAGAGGTACTACCAATTATGA 1020 0.4382 MAFHEHLQQEIAFQRFTEEEEADEERVSWLNNNNNNVNARQQNFMQMEPERREKSMDRNHQSDNNCETEELREYKAEILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVLQKYSSVGIGNMDPKDLDHFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSSGEGTGATMSDDEEEQAESNARLYNEGSSLDGVDTLGFGPLVPTETERSLMERVRLELKHELKQGYKEKIVDVREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANSPSSSNSKTKRKRYYQL* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4652 339 Gene3D - 259 320 - -
Mal5g4652 339 SMART HOX_1 260 325 IPR001356 GO:0003677
Mal5g4652 339 Pfam KNOX2 domain 132 178 IPR005541 GO:0003677|GO:0005634
Mal5g4652 339 SMART KNOX1_2 72 116 IPR005540 GO:0003677|GO:0005634
Mal5g4652 339 Pfam ELK domain 238 259 IPR005539 GO:0003677
Mal5g4652 339 Pfam Homeobox KN domain 278 317 IPR008422 GO:0003677|GO:0006355
Mal5g4652 339 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 19 336 - -
Mal5g4652 339 SMART ELK_2 238 259 IPR005539 GO:0003677
Mal5g4652 339 SUPERFAMILY Homeodomain-like 260 325 IPR009057 -
Mal5g4652 339 MobiDBLite consensus disorder prediction 179 200 - -
Mal5g4652 339 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 19 336 - -
Mal5g4652 339 SMART KNOX2_2 123 179 IPR005541 GO:0003677|GO:0005634
Mal5g4652 339 MobiDBLite consensus disorder prediction 318 339 - -
Mal5g4652 339 ProSiteProfiles 'Homeobox' domain profile. 258 321 IPR001356 GO:0003677
Mal5g4652 339 CDD homeodomain 261 320 IPR001356 GO:0003677
Mal5g4652 339 ProSiteProfiles ELK domain profile. 238 258 IPR005539 GO:0003677
Mal5g4652 339 Pfam KNOX1 domain 74 115 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4652 Mal-Chr5 119238289 119244726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4652 74 334 Homeobox Transcription Factor Family AT5G11060 81.132 5.89e-157 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mal5g4652 KNOX2 2.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4652 - - gmx:100781997 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4652 5 119238289 119244726 Mal5g4652 5 119238289 119244726 ECH