Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4646 ATGGGTTCCAGCTCTAGTCGACTTCGGTCTCGCCCTTCTTCCACTCAAAGGGTCAACAACCATCGCTTCAGATTCTCTTCTTTTCTATGTGGCGCTTCCACCTCTCGCTCCATTTCTCAGATGGAAGAGTATCAATATGAAGAACTTCAGGTTGATCCGGCTAGAGATTTTGATGATGAAATTCAGAAGCTCGCTGATGAGTCGACGTTATCAGGTACAGAAGAAGCTAGAATTAGTTGCTGCCCTCAAGCTGAAACTTCAACCTCAACCGATATGAGAAATGAGTTCCATGGGAGTGCTACTGTTGAAGGTTCTTCTGGAAATGTTGCAACAAGTAGTCAGAGGAATTGCTTGTCTGAACTTAAGGAGCTACTCCCTCCTTATCAGGTAAGTGGTGGTCATAGCCATCCTGAATCATATAGTGATAGTAACAGTGCAGCTAGTACTTCATTTGTTGAACATCAATCTTCAGATCCAGTCTCTGTTAATGATTCTGCTAACAAGGATAGAATCAATAATGTTGATGATCCAGTGTTTAGCGGTGTCTCTCAAATATCTCATGAGATCGCGCATCCAAGGAGTTCAATCTCTCAAGAGCATGGAAATGTCGGTTCTGGTGAAATTTCTGTTGAGAATGACACAGATACTGGCATATCTATCCATAGTTCTTCCGTTCCTGTTTCTCAAGCTTCTAATACGCCACCAACTTCTCAAGTGCCAGAAGATGGACCTCGTCATGAAACATTTCCTTCAGGTTTAGGTATTCTTGTGTCCAATCGGGAAATAGTGCAGGGAAATGATGGTCTGTTTCAAGTTGATGTGGTCGCAATATCTTCCAACATTTTGTCTGGCAGCAATGCAGATGCCGATGATCGTGACGCCAGAAGGAATGGTAGATTATTTTGGGATGCTTTTTCACAACGTAGTTCTAGAAGGCTTGGTGATTCTCCAACCATCGTTTTCTCTACTGGAGGCGCTGATGATTTGGCATCTCAAGATCGGTGGCATGTTGATTTTGATGAGGATTTATCAAATTACGGGGTTGGGGGTGCGTCTGGATACAGGGGCAGCAGAATTCACAGATTGAATGAAAGAGTGCGACACTCAAGATCTGAGATCTGGGAAAGGCTTCGTGGCGGCCTTGATGAGATTGGTCGGTTGAACACTTCATGTCCATTAGGACTCCATGCAGATGGTATGTGCTCGTGCGAGTCATTCCCAATGGCTGAGGAATCTGGCACTCGATCAAGTATTTCAAGAATAGTCATGCTGGCTGAAGCTCTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGGATCCCAATCCCTATCCACCTCCGTCCCTGCACCTGAATCAGTCGTGGACTCTTTCCCTCTGAAGTCTCACAAAAAGGTTGATGCAGCTGATGGAGGCAATGATGCTGAACAATGTTACATATGCCTGGCGGAGTATGAAGATGAGGACCAAATACGGGTTCTTCCTTGCAAGCATGAATATCACATGTCGTGTGTTGATAAGTGGCTGAAGGAAATACACGGTGTGTGTCCTCTATGTCGCAGCAATGTTTGTGGAGGGTTAACGGAGTCGTCAACCGACTCAGAAGTGCAGTCTCGGTGA 1620 0.4506 MGSSSSRLRSRPSSTQRVNNHRFRFSSFLCGASTSRSISQMEEYQYEELQVDPARDFDDEIQKLADESTLSGTEEARISCCPQAETSTSTDMRNEFHGSATVEGSSGNVATSSQRNCLSELKELLPPYQVSGGHSHPESYSDSNSAASTSFVEHQSSDPVSVNDSANKDRINNVDDPVFSGVSQISHEIAHPRSSISQEHGNVGSGEISVENDTDTGISIHSSSVPVSQASNTPPTSQVPEDGPRHETFPSGLGILVSNREIVQGNDGLFQVDVVAISSNILSGSNADADDRDARRNGRLFWDAFSQRSSRRLGDSPTIVFSTGGADDLASQDRWHVDFDEDLSNYGVGGASGYRGSRIHRLNERVRHSRSEIWERLRGGLDEIGRLNTSCPLGLHADGMCSCESFPMAEESGTRSSISRIVMLAEALFEVLDEIHRQPGSQSLSTSVPAPESVVDSFPLKSHKKVDAADGGNDAEQCYICLAEYEDEDQIRVLPCKHEYHMSCVDKWLKEIHGVCPLCRSNVCGGLTESSTDSEVQSR* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4646 539 Pfam Ring finger domain 477 520 IPR001841 -
Mal5g4646 539 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 537 - -
Mal5g4646 539 MobiDBLite consensus disorder prediction 191 239 - -
Mal5g4646 539 MobiDBLite consensus disorder prediction 191 250 - -
Mal5g4646 539 SMART ring_2 478 519 IPR001841 -
Mal5g4646 539 ProSiteProfiles Zinc finger RING-type profile. 478 520 IPR001841 -
Mal5g4646 539 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 537 - -
Mal5g4646 539 MobiDBLite consensus disorder prediction 128 178 - -
Mal5g4646 539 MobiDBLite consensus disorder prediction 134 168 - -
Mal5g4646 539 SUPERFAMILY RING/U-box 466 523 - -
Mal5g4646 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 436 524 IPR013083 -
Mal5g4646 539 CDD RING-H2_PA-TM-RING 477 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4646 Mal-Chr5 119199916 119203309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4646 390 524 C3H Transcription Factor Family AT5G45290 51.316 2.60e-38 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4646 - - gmx:100783604 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4646 5 119199916 119203309 Mal5g4646 5 119199916 119203309 ECH