Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4548 ATGGAGCTTCATTTGAGTCTTGCTCTCTCCACTTATAATAATTCTTGTGCCTACGATGCAACTAGTAAGAACCACTTCCCTTTGAACCATAATAATAAGAAACGCAATTTTTCTCAACTCTTGGAGCATGCAGCAGAAAGCACCAATCTTCCCACTTTGTCTCTCCTCCCATTAACTCCTGGCCACTCAGATATTGATCAACACTGTTGTCACAGTTCCACTACCACCATCACCAAGAGCAATGAGGATGATGATGAAGCTCTCGTGGGATGGCCCCCGGTTAATTATAGGAGGAAAAAACTTCGTTTTAATGGAAACGATGTTGAAGATAACGTGGTCCTCATTGATGGTTATCATAATCAAAGGAATTATGTGAAGGTGAAGATGGAAGGTGTAGGAATAGCTCGAAAGGTTAATCTTAGCATGCACCATTCATTTTATACTCTCAAACAAACTTTGATGGACATGTTTGAAAAATGTGATGATCAACCGTATGAACTGGTTTATCAAGACAAAGAAGGTGATTGGCTTCTTGCTCAAGATATTCCATGGAGAAGTTTCATTCGGTGTGCGCAACGCCTCAAATTGCTCAAGAGCAGAGGATAA 606 0.4059 MELHLSLALSTYNNSCAYDATSKNHFPLNHNNKKRNFSQLLEHAAESTNLPTLSLLPLTPGHSDIDQHCCHSSTTTITKSNEDDDEALVGWPPVNYRRKKLRFNGNDVEDNVVLIDGYHNQRNYVKVKMEGVGIARKVNLSMHHSFYTLKQTLMDMFEKCDDQPYELVYQDKEGDWLLAQDIPWRSFIRCAQRLKLLKSRG* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4548 201 ProSiteProfiles PB1 domain profile. 122 201 IPR000270 GO:0005515
Mal5g4548 201 SUPERFAMILY CAD & PB1 domains 120 196 - -
Mal5g4548 201 Pfam AUX/IAA family 27 159 IPR033389 -
Mal5g4548 201 Pfam AUX/IAA family 161 199 IPR033389 -
Mal5g4548 201 Gene3D - 117 201 - -
Mal5g4548 201 PANTHER AUXIN-RESPONSIVE PROTEIN IAA20 1 199 - -
Mal5g4548 201 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 199 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4548 Mal-Chr5 117804263 117825100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4548 119 199 B3 DNA Binding Superfamily AT3G61830 32.558 5.39e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mal5g4548 AUX_IAA 4.7e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4548 K14484 - gmx:100808466 196.052
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4548 5 117804263 117825100 Mal5g4548 5 117804263 117825100 ECH