Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4533 ATGTCTAGCTGCAGCATCGATGTTGCACCTGCAGAGCAACTTTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGACATAGTGACCGTTCGATGTGGTCACTGCACAAATCTATGGTCTGTGAACATGGCCGCCGCGTTTCAATCACTGTCATGGCAAGATGTTCAGGCACCTAACCAGTGCATGAATAATCCAGAATATAGGATTCGAACTGGCTCCAATTCCAATTCCAAATGCAACGATAGGATTGCAATGCGTTCTGCACCAACCAACCATGTAACTCAGGAAAGGGTTGTTAACCGCCCTCCCGAGAAGAGGCAACGTGTACCTTCTGCTTATAATCAGTTCATCAAGGAAGAGATTCAGAGGATCAAGGCTAATAATCCTGATATCAGTCACAGGGAAGCTTTTAGTACTGCTGCAAAGAATTGGGCACATTTTCCTCATATTCATTTTGGACTGATGTTGGAGACCAACAATCAAGCTAAGATGGAGACTGTGTCTGAGAAGCGTTTGATGTCAAGGGCTGCACTGATGAACAAATGA 579 0.4473 MSSCSIDVAPAEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQAPNQCMNNPEYRIRTGSNSNSKCNDRIAMRSAPTNHVTQERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLETNNQAKMETVSEKRLMSRAALMNK* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4533 192 Gene3D High mobility group box domain 103 182 IPR036910 -
Mal5g4533 192 PANTHER PROTEIN YABBY 6-RELATED 1 182 IPR006780 GO:0007275
Mal5g4533 192 SUPERFAMILY HMG-box 109 158 IPR036910 -
Mal5g4533 192 PANTHER AXIAL REGULATOR YABBY 5 1 182 - -
Mal5g4533 192 Pfam YABBY protein 10 165 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4533 Mal-Chr5 117464824 117467947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4533 7 175 C2C2-YABBY Transcription Factor Family AT2G26580 74.556 1.95e-88 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Mal5g4533 YABBY 1.3e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4533 K25796 - gmx:100499942 345.125