Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4519 ATGGTTCAATCAAAGAAGTTCAGAGGTGTCAGGCAGAGACATTGGGGTTCTTGGGTTTCAGAGATTCGTCACCCACTTTTGAAAAGAAGGGTGTGGCTAGGAACATTTGAAACAGCAGAAGAAGCAGCTAGAGCATATGATCAAGCAGCGATTTTAATGAGTGGTAGAAATGCCAAAACCAATTTTCCAATAACACAAACACCTGAAGGTGATCCAAAGAGCAGCACAAGTACTGAGAACAAACCTTCAACATCTTCAAAGGATCTAGAAGAAATATTGCATGCTAAGCTTCGAAAATGTGGTAAGGTACCATCTCCTTCAATGACTTGTTTGAGGCTTGACACAGAAAACTCTCACATTGGTGTGTGGCAAAAACGTGCTGGGAAGTGTTCTGATTCAAATTGGGTTATGACTGTTCAACTTGGGAAAAAGAAGAGTGTAACCGAAGATAGTGGTAGTAGTAGCAGTAGTAGTATTGTGCCTTCATCGGTGGTCGCAACAGGAGAGGAAATTGTGCGAGGAGAGATTGATGAAGAAGATAGAATTGCACTTCAAATGATAGAGGAACTTCTTAATGACAAGAACTGTCCTAGCCCAACAATTATCAATAATAAGCAAGGGGATGATATTCGTAACAGCTTTTTTCTTTAA 651 0.404 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSSTSTENKPSTSSKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGKCSDSNWVMTVQLGKKKSVTEDSGSSSSSSIVPSSVVATGEEIVRGEIDEEDRIALQMIEELLNDKNCPSPTIINNKQGDDIRNSFFL* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4519 216 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Mal5g4519 216 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 201 - -
Mal5g4519 216 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 201 - -
Mal5g4519 216 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Mal5g4519 216 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Mal5g4519 216 MobiDBLite consensus disorder prediction 60 87 - -
Mal5g4519 216 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Mal5g4519 216 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Mal5g4519 216 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Mal5g4519 216 MobiDBLite consensus disorder prediction 60 83 - -
Mal5g4519 216 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Mal5g4519 216 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4519 Mal-Chr5 117300496 117301612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4519 1 192 AP2-EREBP Transcription Factor Family AT1G15360 65.174 6.29e-80 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal5g4519 AP2 8.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4519 - - gsj:114375848 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4519 5 117300496 117301612 Mal2g0876 2 10142490 10143244 ECH
Mal5g4519 5 117300496 117301612 Mal1g5522 1 130299967 130301586 ECH
Mal5g4519 5 117300496 117301612 Mal5g4519 5 117300496 117301612 ECH