Home
Resource
Genome
JBrowse
Transcriptome
Metabolomics
Pan-genome
External database links
Search
Annotation
Pathway
Duplication type
Transposable elements
Regulatory proteins (RPs)
N6-methyladenosine (m6A)
Browse
Syn-based OGs
Gene-families
Synteny
Syn-Blocks
Syn-Dotplots
Deco-Alignments
Pvu_syntenic
Vvi_syntenic
WGDs- Genes
Anc-Genome
Anc-Reference
Tools
All tools
Genome browsing and annotation
Jbrowse
ShinyCircos
Interproscan
iTAK
Dupgen finder
Homology search and alignment
Bl-match
Seq-fatch
Blast
Diamond
Bi-visualazition
Synteny inference
MCScanX
ColinearScan
Synviso
Syn-blocks-stat
B-Dotter
BB-Dotter
BK-Dotter
Evaluation of nucleotide mutation
ParaAT
KaKs calculator
NG-KaKs-Cal
Paleogenome fractionation
Paleo-gene identifier
Syn-deco generator
Paleo-gene_RI
Paleo-gene_RII
P-index-calculator
Multi-syn-phytre
Gene structure and evolution
Codonw
Cpgfinder
MEME
GSDS
Hmmer
Pfam
FastTree
IQ-Tree2
Multigene-align
Heatmap
Lollipop
Gmapping
GF-Circos
Other auxiliary tools
GC-calculator
Seqlenth-calculator
Genstr-counter
Gam-Calculator
SAF-converter
BDI-finder
BDI-deduplicator
BDI-extractor
BDI-combiner
Seq-corrector
Subtree-splitter
Sptaxon-accessor
SS-extractor
WinO-WGDI
Block_run
KaKs calculate
Blast dotplot
Ks dotplot
Block_info
Correspondence
Statistics
Overview
Phylogenetic tree
Identification of polyploidy
Bar chart
Heatmap
Gene function annotation
Functional genes
Transcription factor
N6-methyladenosine(m6A)
Bar chart
Heatmap
Transposable elements
Documentation
Platform Manual
Pipeline flow examples
L-Wikipedia
Species introduce
Literatures
Common pests
Diseases
Economic value
Planting methods
About
Submission
Community
Contact
Gene search
Sequence information
Show
10
25
50
100
entries
Search:
Select
Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Mal5g4504
ATGACAGGAGAAGCTGTTAACCCTAAAGCATACCCTTTGGCTGATGCTCAGCTGACAATAACAATTATGGATCTTGTTCAACAAGCTGCTAATTATAAGCAACTCAAAAAGGGTGCTAATGAAGCTACTAAGACACTGAATAGGGGTATTTCTGAGTTTGTTGTTATGGCTGCTGATGCTGAACCTCTTGAGATTCTTCTCCATCTTCCTCTACTTGCTGAGGATAAGAATGTTCCCTACGTGTTTGTCACATCAAAACAAGCACTTGGGCGTGCTTGTGGTGTCACCCGACCAGTCATTGCTTGTTCTGTGACAACTAATGAAGGAAGTCAATTGAAATCTCAAATTCAGCAACTCAAGGATGCTATTGAGAAGCTGCTAATCTGA
387
0.416
MTGEAVNPKAYPLADAQLTITIMDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVTSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI*
129
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Annotation information
Show
10
25
50
100
entries
Search:
Select
Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Mal5g4504
128
PRINTS
High mobility group-like nuclear protein signature
8
21
IPR002415
GO:0003723|GO:0005730
Mal5g4504
128
PRINTS
High mobility group-like nuclear protein signature
21
36
IPR002415
GO:0003723|GO:0005730
Mal5g4504
128
PRINTS
High mobility group-like nuclear protein signature
38
48
IPR002415
GO:0003723|GO:0005730
Mal5g4504
128
PRINTS
High mobility group-like nuclear protein signature
82
94
IPR002415
GO:0003723|GO:0005730
Mal5g4504
128
PANTHER
NHP2-LIKE PROTEIN 1
4
128
-
-
Mal5g4504
128
Pfam
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
22
111
IPR004038
-
Mal5g4504
128
ProSitePatterns
Ribosomal protein L7Ae signature.
73
90
IPR004037
GO:0042254|GO:1990904
Mal5g4504
128
PRINTS
Ribosomal protein L7A/RS6 family signature
35
49
IPR018492
-
Mal5g4504
128
PRINTS
Ribosomal protein L7A/RS6 family signature
54
67
IPR018492
-
Mal5g4504
128
PRINTS
Ribosomal protein L7A/RS6 family signature
70
80
IPR018492
-
Showing 1 to 10 of 15 entries
Previous
1
2
Next
Select All
Download Selected Rows
Duplication type information
Show
10
25
50
100
entries
Search:
Select
Gene
Chromosome
Start
End
Duplicated_type
Mal5g4504
Mal-Chr5
117094486
117096060
Wgd
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Functional genes information
Show
10
25
50
100
entries
Search:
Select
Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Mal5g4504
35
124
Cytoplasmic Ribosomal Protein Gene Family
AT2G47610
28.889
3.42e-06
42.7
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Pathway information
Show
10
25
50
100
entries
Search:
Select
Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Mal5g4504
K12845
-
jre:109010760
234.958
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Event-related genes
Show
10
25
50
100
entries
Search:
Select
Gene_1
Chr_1
Start_1
End_1
Gene_2
Chr_2
Start_2
End_2
Event_name
Mal5g4504
5
117094486
117096060
Mal5g4504
5
117094486
117096060
ECH
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows