Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4502 ATGGCAGCATCACCGTGGTTTGATTCAGCTACTCAAAAACAAAATCGTCCATCTCAACCACTTTACGTTCCTCAATTCCGTTCAAATCCAAACAACACCAACATTCATCCTTCACCATACAACAACAACAGCAATCGAACCCATTTTCCCTCATCCAACGATTCACCTCACTACACTTTCAATCGCTCCACTCCCAGACCACCACGTGGCAGAGGCGGTTACGGTTTCGCTCACGCTCACCCTCCGCCACGTCATTACTCTCGTCCTGAACAACCACCACAACAACAACAACCACGCTATTACGATCCTTCTCAAAACCGGTCACCGTTTGAAACTAACGGTGAAAAAGTTGAAAACGGCGTCGTTGCGAATTTTGAAGCGTATGAATCGGTACCGGTGGAAGCGACCGGAGAGAATGTTCCACCGCCGGTGAATCTATTCGCGGAAACGGAGCTTCATGAGGATTTGAAGAATAACATTGAGAAATGTAAGTATGTCAAACCTACTCCGGTTCAGCGTTACGCGATCCCCATTGCTGTTGCTGGTAGAGACCTTATGGCTTGTGCTCAAACTGGTTCGGGTAAAACGGCGGCGTTTTGTTTTCCGATTATATCTGGGATCATGAAGGAACGTTTAGCTTCTGGCTTGTCTTCGTCTTTGCCACGTGGCGGTGGTGATTTCAATATTGCATTTCCCACCGCACTCATCTTGTCTCCAACTAGGGAGTTATCGTGCCAGATACACGCTGAAGCTTGCAAGTTTGCGCATCAAACAGGAGTGAAGATTGCAGTTGCATATGGGGGTGCTCCTATTGGACAACAGTTAAGGATTTTGGAACGAGGTGTTGATATTTTGGTTGCGACTCCGGGTCGTTTGGTTGATATGATTGAGAGGGAAAGGGTTTCTTTGAAGAAGATTAAATATCTTGCTTTGGATGAGGCTGATCGGATGCTGGACATGGGTTTTGAGCATCAGATTCGCAATATTGTGCAGCAGATGCATATGCCTCCTCCTGGTGATAGACAGACTTTGCTTTTCAGTGCTACCTTTCCGGATAATATACAGAAGCTTGCATCTGATTTTTTATCAAACTATGTGTTCCTGGCTGTTGGAAGGGTTGGTTCAAGCACTGAGCTGATTGTACAGAAAGTTGAATCTGTACAGGATATGGAGAAAAGGAATCGTCTTGTGGATCTTCTCCGGTGCAATGTAGTCAATGGGAAGCTTGCTTTAACTCTTGTGTTTGTTGAAACAAAGAAAGGAGCTGATGCTTTAGAAAACTGGTTGTGTAGAAGTGGCTTTCCAGCTATTGCAATACATGGTGACAAAGTTCAAATGGAGCGTGAACGAGCTTTGAGATCTTTTAAGCGTGGTCTTACTCCAATAATGGTTGCAACTGATGTTGCTTCTCGAGGATTGGATATCCCTCACGTGGCTCATGTTATTAACTTTGACTTGCCCAGAGACATTGATGACTATGTACATAGAATTGGTAGGACAGGCCGTGCTGGTCAATCTGGTTTAGCAACAGCTTTCTTTAGCACCAAGAACATGCCTATGGCGAAGTCTCTTGTTGGTCTTTTACAGGAAGCAAAACAAGAAGTTCCTGCATGGCTTGTCCAATATTCTGAGTGTTCAGCACCAGGTGGACGCAGCAGCGTTGGATCTCAACGGTCACCCTGGAGAGGCAATTACGGAGGCCGCGATTTTCGGAATGCTACAGAACCTGGAATGGTGGAGAATTATAACAACTACAACAGTAATTACAGCAATTATGGTGATAATGGATTCCACAATGTTCCTGAACAGGTGCAGAATTACAACTACAATGGCACCTACAACAATGAAGACCATGCTGCCAACTCATATACTGATGCCTCTTTAGACATTACAAACTCTAACAACGATTGCTCTTTTGATAACACTAATACAGCGGTTGCCGGTGGTTACAATTACACTGATGCTGGTTTATTGGAAGGTAGTGATGGTAAAAATGGGCCATGCGGTTATGCATCCGTTGTGCCCACTGGATGGGATTAA 2040 0.449 MAASPWFDSATQKQNRPSQPLYVPQFRSNPNNTNIHPSPYNNNSNRTHFPSSNDSPHYTFNRSTPRPPRGRGGYGFAHAHPPPRHYSRPEQPPQQQQPRYYDPSQNRSPFETNGEKVENGVVANFEAYESVPVEATGENVPPPVNLFAETELHEDLKNNIEKCKYVKPTPVQRYAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGIMKERLASGLSSSLPRGGGDFNIAFPTALILSPTRELSCQIHAEACKFAHQTGVKIAVAYGGAPIGQQLRILERGVDILVATPGRLVDMIERERVSLKKIKYLALDEADRMLDMGFEHQIRNIVQQMHMPPPGDRQTLLFSATFPDNIQKLASDFLSNYVFLAVGRVGSSTELIVQKVESVQDMEKRNRLVDLLRCNVVNGKLALTLVFVETKKGADALENWLCRSGFPAIAIHGDKVQMERERALRSFKRGLTPIMVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGQSGLATAFFSTKNMPMAKSLVGLLQEAKQEVPAWLVQYSECSAPGGRSSVGSQRSPWRGNYGGRDFRNATEPGMVENYNNYNSNYSNYGDNGFHNVPEQVQNYNYNGTYNNEDHAANSYTDASLDITNSNNDCSFDNTNTAVAGGYNYTDAGLLEGSDGKNGPCGYASVVPTGWD* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4502 679 MobiDBLite consensus disorder prediction 1 62 - -
Mal5g4502 679 Pfam DEAD/DEAH box helicase 169 357 IPR011545 GO:0003676|GO:0005524
Mal5g4502 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 521 IPR027417 -
Mal5g4502 679 Gene3D - 370 545 IPR027417 -
Mal5g4502 679 MobiDBLite consensus disorder prediction 90 113 - -
Mal5g4502 679 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 176 368 IPR014001 -
Mal5g4502 679 Gene3D - 100 369 IPR027417 -
Mal5g4502 679 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 37-LIKE ISOFORM X1 63 584 - -
Mal5g4502 679 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 145 173 IPR014014 GO:0003724
Mal5g4502 679 CDD DEADc_DDX3_DDX4 147 374 IPR044763 GO:0003724|GO:0005524
Mal5g4502 679 Pfam Helicase conserved C-terminal domain 392 504 IPR001650 -
Mal5g4502 679 SMART ultradead3 164 383 IPR014001 -
Mal5g4502 679 CDD SF2_C_DEAD 380 513 - -
Mal5g4502 679 SMART helicmild6 423 504 IPR001650 -
Mal5g4502 679 MobiDBLite consensus disorder prediction 1 113 - -
Mal5g4502 679 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 63 584 - -
Mal5g4502 679 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 403 543 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4502 Mal-Chr5 117078224 117081281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4502 143 524 Eukaryotic Initiation Factors Gene Family AT3G19760 31.854 1.20e-58 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4502 K11594 - gmx:100817549 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4502 5 117078224 117081281 Mal5g4502 5 117078224 117081281 ECH