Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4493 ATGGACGAAGATTTTCTAATGCGTAACACAGATTGCGTTTATTTCTTGGCTTCACCACTCACTTGCAAGAAGGGTGCAGAGTGTGAGTATAGGCACCATGAAATTGCGAGGCTTAACCCGAGGGATTGTTGGTACTGGTTATCTGGGAACTGTCTTAATCCAACTTGTGCTTTTAGACACCCTCCTTTGGATGGGTACGCTGGAGTGCCATCTGAATCTACGCAACCTTCATTACCTGCAACTGCAAACAAGACAATGGTTCCCTGTTACTTTTTCTTCAATGGGTTTTGCAACAAAGGTAACAAATGCTCATTTTTGCATACGCCTGATGATAGCTCGCTCACTGTAAAGCCTTTGAAGAATGACACTGTAAAGCCGTTGAAGAATGACACTGTAAAGCCGTTGAAGAATGACACTGTAAAGCCGTTGAAGAATGACACTGTAAATCCGTTGAAGAATGACATTGTAAAGCCTTTAAAGCTTGACACTGTGAAGCCTTTGATGAATGACAACGGAAGCATTAATGCACTCAACTTAGAAAATAAAACTTCACCGGGAAATAAAACATGTGTAGCATCAACACCAGGTGGAACACATTTTGACCAATCTTTATCTGCTCCAAAAGCTTTGTCTGATATTAAACTTCATGCTAAGGAAGATCTTCAGTTACCATTACCCAAAAATGTTAAGCAGCAAGATGATTGCTTGGAATTACCTGCTGTGTCTCAGTCAGACTCTCCGTTACCAGATGACGGCTTTGCTCATAACATTTCTCCTTCATTCACTGAGCAGAGTTCAGAGGAGCACGAAGATAGTCAGGTAGAGCCTGAGGAACGGTGGGAGTCCTCCCCTGGATTTGATGTTCTTGTTCATGATGAATCTGGGAACCTGGGTTATGTCGACGATTCTGAATATTTGCCAGTGCTTGATATGGAGGATCGTGAACTGAATGAGCAATACCCGGCGTATGAATTTAAAGATACTCAAGAGTATGACACCATGTACTCAGACCCTGATATTCTGTATGAACATGGACGATGTGATGATTACAGATGTTTTGATAGAGATTTTAGTAGTGCTTGTGAAAGGAAAGTTTGTGGTTATTCCAGGGAGTTAGTCTTGGATTCTATATTTTCCAGGAAAAGGATTCGGATGTCAGTTGCTGATATGGCTGCTTGCGAATCTGATTCAGATCTACGTGACCATCTGAGAAGACGCAGGGAGGTCTATGGTCCTCCTGAGACAGGTTCCTTAAGAAGACACGAATCGTCTTCTTTGATGGTTCGAAACCAGGAAAGGCATCAAAGGCAAAGCATTGGTCAGCGGCAAAATAGAAGATTAACATCACAATTAGGATTTAGTTCAATCAGACAGGTTGAAGATCGTCCAATTGCTAACAAGCACATGTCATTTAGGCCTTCTCAGCAAAATAGGCCAAGGAAGCATTTTAGAGAAAAACCAGCTAAACGGCCATTTCATTCATCTAAAGTACCCAGGAAACCAGTTGTGAAGCAACCGAGATTTATTCAGAAATCCAATACATTTTCAGGGCCCAAGACTCTTGCAGAAATAAAAGAAGAGAAGAAGAAAAAGGCTGGTGAAAGTTCACACTGTGAAAGCTCGTTAGCTGGTTTCCAGGATCCCAAACCTCTGCATGAAATTCTCAAAGACAGAAGGACCATGGATTGA 1689 0.4192 MDEDFLMRNTDCVYFLASPLTCKKGAECEYRHHEIARLNPRDCWYWLSGNCLNPTCAFRHPPLDGYAGVPSESTQPSLPATANKTMVPCYFFFNGFCNKGNKCSFLHTPDDSSLTVKPLKNDTVKPLKNDTVKPLKNDTVKPLKNDTVNPLKNDIVKPLKLDTVKPLMNDNGSINALNLENKTSPGNKTCVASTPGGTHFDQSLSAPKALSDIKLHAKEDLQLPLPKNVKQQDDCLELPAVSQSDSPLPDDGFAHNISPSFTEQSSEEHEDSQVEPEERWESSPGFDVLVHDESGNLGYVDDSEYLPVLDMEDRELNEQYPAYEFKDTQEYDTMYSDPDILYEHGRCDDYRCFDRDFSSACERKVCGYSRELVLDSIFSRKRIRMSVADMAACESDSDLRDHLRRRREVYGPPETGSLRRHESSSLMVRNQERHQRQSIGQRQNRRLTSQLGFSSIRQVEDRPIANKHMSFRPSQQNRPRKHFREKPAKRPFHSSKVPRKPVVKQPRFIQKSNTFSGPKTLAEIKEEKKKKAGESSHCESSLAGFQDPKPLHEILKDRRTMD* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4493 562 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 561 - -
Mal5g4493 562 MobiDBLite consensus disorder prediction 264 282 - -
Mal5g4493 562 Gene3D - 77 138 - -
Mal5g4493 562 Gene3D - 6 63 - -
Mal5g4493 562 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Mal5g4493 562 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Mal5g4493 562 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Mal5g4493 562 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Mal5g4493 562 SUPERFAMILY CCCH zinc finger 83 108 IPR036855 GO:0046872
Mal5g4493 562 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Mal5g4493 562 MobiDBLite consensus disorder prediction 410 449 - -
Mal5g4493 562 MobiDBLite consensus disorder prediction 240 282 - -
Mal5g4493 562 MobiDBLite consensus disorder prediction 425 439 - -
Mal5g4493 562 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 1 561 - -
Mal5g4493 562 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Mal5g4493 562 MobiDBLite consensus disorder prediction 474 497 - -
Mal5g4493 562 Pfam RNA-binding, Nab2-type zinc finger 88 107 - -
Mal5g4493 562 Pfam Zinc-finger containing family 8 62 IPR041686 -
Mal5g4493 562 MobiDBLite consensus disorder prediction 461 562 - -
Mal5g4493 562 MobiDBLite consensus disorder prediction 521 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4493 Mal-Chr5 117012890 117016007 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal5g4493 zf-CCCH_3 7.7e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4493 - - mtr:MTR_4g114040 815.839
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4493 5 117012890 117016007 Mal5g4493 5 117012890 117016007 ECH