Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4488 ATGAATTTTCCAAACGATATTCCAACCTGTAGGATGTCACCGCCGCAGTTTGCTTCATCCAACAACGATATCATTGAAGTGAGGCCTCAATTCCCAATGAATAACGATCACTTTGAGCCACACTCTTTCAAGAGGCCAAGAATTTCTGATAACCATCATTCTGGTGGATTGATATGCCCTCCTTCAAGGATGATTCAGCCTCCACCAAACCGAGGAACCAGCAGCATTTTTTTCAAGACCCGAATTTGTACTAAGTTCAATATTGGTACTTGTAGAAACGGCGAAAACTGCAACTATGCTCATGGGGATCATGATTTAAGGCAGCCACCGCCGAATTGGCAGGAGCTAGTTGACCCTCGCAACGAGGAACGGCTGCAGGTGGAGATAAGGAAGCCACCACCAAATTGGGATGAAGCTCGAAAATTCATTCATAGGATGAATCTGTGCAAGAAGTATTACAATGGTGAGGAATGTCCTTATGGTGACAAGTGTACCTTTCTTCATGAGGATCCTGCTAGGTTTAGGGATGATTCTTGGAAAACAAGAGAGTGTTCTGCAATAAGCGTTGGAACCATTGGTTCTCCAAAGTCTTTTGGGGATGGTTCTAACAAATTGGAAGGCTTTAGGGATGTGAACAAGCTAGCAAGGGGAGCTTTTCGGAAGACTAAGCTTTGTCACCAATGGCAGCATACAGGGAGCTGTCCCTTTGGGGAGAACTGTGACTTTGCTCATGGAGAAGCAGAGTTACGAGTTCCTAGTGGAGGCATTGAAGCTGAAGCTGCAGTTGCCATAGCAAACTCAAAAGCTATCATTCGAACTTCACCAAATACCTTATCAGTTTCTGCCCATGATTCACCTACTATCTTCCCCACAAGTCTACTATTGACAAAGGAAGAGGAGCAGGCTAAGAACAAGCGTTTACTTAAGTTGAAGTTAGGCAAGAAGATCAACGGTATTTATGGTGATTGGATTGATGATTAA 981 0.4393 MNFPNDIPTCRMSPPQFASSNNDIIEVRPQFPMNNDHFEPHSFKRPRISDNHHSGGLICPPSRMIQPPPNRGTSSIFFKTRICTKFNIGTCRNGENCNYAHGDHDLRQPPPNWQELVDPRNEERLQVEIRKPPPNWDEARKFIHRMNLCKKYYNGEECPYGDKCTFLHEDPARFRDDSWKTRECSAISVGTIGSPKSFGDGSNKLEGFRDVNKLARGAFRKTKLCHQWQHTGSCPFGENCDFAHGEAELRVPSGGIEAEAAVAIANSKAIIRTSPNTLSVSAHDSPTIFPTSLLLTKEEEQAKNKRLLKLKLGKKINGIYGDWIDD* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4488 326 Gene3D - 215 251 - -
Mal5g4488 326 Gene3D - 70 108 - -
Mal5g4488 326 Gene3D - 142 172 - -
Mal5g4488 326 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 221 246 IPR000571 GO:0046872
Mal5g4488 326 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 78 102 IPR000571 GO:0046872
Mal5g4488 326 ProSiteProfiles Zinc finger C3H1-type profile. 219 247 IPR000571 GO:0046872
Mal5g4488 326 ProSiteProfiles Zinc finger C3H1-type profile. 148 171 IPR000571 GO:0046872
Mal5g4488 326 ProSiteProfiles Zinc finger C3H1-type profile. 77 104 IPR000571 GO:0046872
Mal5g4488 326 Pfam CCCH-type zinc finger 148 168 IPR041367 -
Mal5g4488 326 SMART c3hfinal6 77 103 IPR000571 GO:0046872
Mal5g4488 326 SMART c3hfinal6 219 246 IPR000571 GO:0046872
Mal5g4488 326 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Mal5g4488 326 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 1 324 - -
Mal5g4488 326 PANTHER CCCH ZINC FINGER/TIS11-RELATED 1 324 IPR045877 GO:0003729
Mal5g4488 326 SUPERFAMILY CCCH zinc finger 219 251 IPR036855 GO:0046872
Mal5g4488 326 SUPERFAMILY CCCH zinc finger 76 107 IPR036855 GO:0046872
Mal5g4488 326 SUPERFAMILY CCCH zinc finger 143 170 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4488 Mal-Chr5 116950996 116953812 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4488 188 250 C3H Transcription Factor Family AT1G68200 35.385 2.73e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal5g4488 zf-CCCH 3.9e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4488 - - mtr:MTR_4g113970 446.047