Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4487 ATGACCTTGCCTCCACCAAATACAGCTACTGGCAATATTTTCTACAAGACTCGAACTTGTACTAAGTTCAGTATCGGTACTTGTAGAAGCGGTACAAAATGCAACTTCGCTCATGGGGTTGAAGAACTAAGACAGCCACCACCAAATTGGCAGGAGCTAGTTGGTCCGTGCAACAAAGATCTGCTGCAGCAGGGAAAACGGAATGAAGATCGAAAAATCATTCATAAGATGAATCTGTGCAAGAAGTATTGCATTGGAGAGACATGTCCATATGGAGATAAGTGCAGATTTCTTCATGAAGATCTTGCACAGTTTAGGGATGGTTCGTGGGAATCAAGAGAGTGCTCAGCAATTACCATTGGAACTATTGGTTCTAATCATTTGGAAGGCAGTAGGGCTGTGAACAAGCAAGCAAGGGACACGTATTGGAAGACAAAGTTGTGTCACAAGTGGCAGCATACAGGAAGCTGTCCCTTTGGAAAGAATTGTCACCATGCTCATGGAGAAGCAGAGTTAAAAGTTCCTGGTGAAGGCATTGAAGCTGAAGCTGCAGTTGCAATAGCAAGATCAACAAACGCTATCAATCCAACTTTACCAAATGCCTTATCAGTTTCTGCCAATGATGCACCCACCACCTCCCTTGCAAATCATCCTGTGGCAAAGGAAGAGGAGCAGCCTAAGATGAAGCGTATACTTGGGTTGAAATTCAGCCAGATCAATCGTATTTATGGTGATTGGATTGATGATTGA 750 0.4347 MTLPPPNTATGNIFYKTRTCTKFSIGTCRSGTKCNFAHGVEELRQPPPNWQELVGPCNKDLLQQGKRNEDRKIIHKMNLCKKYCIGETCPYGDKCRFLHEDLAQFRDGSWESRECSAITIGTIGSNHLEGSRAVNKQARDTYWKTKLCHKWQHTGSCPFGKNCHHAHGEAELKVPGEGIEAEAAVAIARSTNAINPTLPNALSVSANDAPTTSLANHPVAKEEEQPKMKRILGLKFSQINRIYGDWIDD* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4487 249 Gene3D - 71 104 - -
Mal5g4487 249 Gene3D - 135 174 - -
Mal5g4487 249 Gene3D - 7 45 - -
Mal5g4487 249 PANTHER CCCH ZINC FINGER/TIS11-RELATED 4 247 IPR045877 GO:0003729
Mal5g4487 249 SUPERFAMILY CCCH zinc finger 12 45 IPR036855 GO:0046872
Mal5g4487 249 SMART c3hfinal6 142 169 IPR000571 GO:0046872
Mal5g4487 249 SMART c3hfinal6 14 40 IPR000571 GO:0046872
Mal5g4487 249 SMART c3hfinal6 74 101 IPR000571 GO:0046872
Mal5g4487 249 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 169 IPR000571 GO:0046872
Mal5g4487 249 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 15 39 IPR000571 GO:0046872
Mal5g4487 249 SUPERFAMILY CCCH zinc finger 141 173 IPR036855 GO:0046872
Mal5g4487 249 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 4 247 - -
Mal5g4487 249 ProSiteProfiles Zinc finger C3H1-type profile. 79 102 IPR000571 GO:0046872
Mal5g4487 249 ProSiteProfiles Zinc finger C3H1-type profile. 142 170 IPR000571 GO:0046872
Mal5g4487 249 ProSiteProfiles Zinc finger C3H1-type profile. 14 41 IPR000571 GO:0046872
Mal5g4487 249 Pfam CCCH-type zinc finger 79 99 IPR041367 -
Mal5g4487 249 SUPERFAMILY CCCH zinc finger 74 100 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4487 Mal-Chr5 116938813 116940264 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4487 144 173 C3H Transcription Factor Family AT1G68200 60.000 5.05e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal5g4487 zf-CCCH 1.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4487 - - mtr:MTR_4g113940 296.204