Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4485 ATGGCTTTTCCAGACGAAATTCCAACATGTAAGATGTCACCGCCGCAATTCACTACATCAAACAGCGATATCATTGAAGTTAGGCCTCGATTTCCGATGAAAAATGAACACTTTGAGCCACATTCAGGATTTGATCAACCCCATTCCTTCAAAAGGGCTAGAATTTCTGATAATAATCGTTCTAATGCTTTGATATGCCCTCCTCCAAGGATGGTTCTGCCTCCATCAAACAGAGCAGACCACATTTTCTACAAGACTCGTATCTGTGTTAAGTTCAGGTTTGGTACATGTAGACTCGGTCAAAATTGCAACTTTGCTCATGGGGTTGAAGAACTAAGGCAGCCACCACCAAATTGGCAGGAGCTAGTTAGTCCTCGCAGCGGCGAACAGCAGCAGCTGAGAAATTGGGAGGAAGAACAAAGAATCATTCACAAGATGAAGCTATGCAAGTGGTATTCCAATGGCGAGGAGTGTTCCTTCGGTAGTAAGTGTAATTTTCTTCATGAGGATCCTGCTAAGTTTAGAAATGATTCTTGGAAGTCCAGAGAGTGTTCTGCTATAAGCATTGGGACTATTGGTTCTACAAAGTCATTTGGAGATGGAATTAGGGCTGTGAACAAGCCAGCTTGGGGCACTTATCGGAAGACTAAGATGTGTCTCCAATGGCAGCATATAGGGAGCTGTCGCTTTAGGGAGGACTGTCACTTTGCTCATGGAGAAGCAGCTGCAGTTGCAATAGCAAATTCAACAAAAGCTATCATTCCAACTGCACCAAAAGCCTTAACAGGTTATGCCAATGATGGACCTACCACCTTCCCTGCAAGTTTACTTGTGGCAAAGGAAGAGGAGAAGGCTGAGAAGAAGCATTTACTTTGGTTGAAATTAAACAAGATTAATCATGTTTATGGTGATTGGATTGATGATCCAAACTTGCCAAGTGCAGTGAAGACCTGA 954 0.4319 MAFPDEIPTCKMSPPQFTTSNSDIIEVRPRFPMKNEHFEPHSGFDQPHSFKRARISDNNRSNALICPPPRMVLPPSNRADHIFYKTRICVKFRFGTCRLGQNCNFAHGVEELRQPPPNWQELVSPRSGEQQQLRNWEEEQRIIHKMKLCKWYSNGEECSFGSKCNFLHEDPAKFRNDSWKSRECSAISIGTIGSTKSFGDGIRAVNKPAWGTYRKTKMCLQWQHIGSCRFREDCHFAHGEAAAVAIANSTKAIIPTAPKALTGYANDGPTTFPASLLVAKEEEKAEKKHLLWLKLNKINHVYGDWIDDPNLPSAVKT* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4485 317 SMART c3hfinal6 213 240 IPR000571 GO:0046872
Mal5g4485 317 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Mal5g4485 317 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Mal5g4485 317 Pfam RNA-binding, Nab2-type zinc finger 222 239 - -
Mal5g4485 317 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 1 309 - -
Mal5g4485 317 SUPERFAMILY CCCH zinc finger 142 170 IPR036855 GO:0046872
Mal5g4485 317 Gene3D - 211 242 - -
Mal5g4485 317 Gene3D - 77 114 - -
Mal5g4485 317 Gene3D - 139 185 - -
Mal5g4485 317 ProSiteProfiles Zinc finger C3H1-type profile. 213 241 IPR000571 GO:0046872
Mal5g4485 317 PANTHER CCCH ZINC FINGER/TIS11-RELATED 1 309 IPR045877 GO:0003729
Mal5g4485 317 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Mal5g4485 317 SUPERFAMILY CCCH zinc finger 213 241 IPR036855 GO:0046872
Mal5g4485 317 SUPERFAMILY CCCH zinc finger 80 114 IPR036855 GO:0046872
Mal5g4485 317 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 108 IPR000571 GO:0046872
Mal5g4485 317 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 145 168 IPR000571 GO:0046872
Mal5g4485 317 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4485 Mal-Chr5 116900345 116902945 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal5g4485 zf-CCCH 1.1e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4485 - - mtr:MTR_4g113860 503.827