Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4441 ATGACGCTGGACGATGATAGCTCCATTTACGTTGGTGGTCTTCCCTACGACGCCAATGATGAGACAATTCGCAATGTCTTCAATTTGTATGGTGCCATTCTTGATGTCAAGATTATCAATGACCAGCGTACAATTGGGAAATGCTATTGTTTTGTTACTTTCACAAACCCTAGGTCTGCAATTGATGCTATCAATGACATGAATGGAAGAACTATTTGTGGGCGTGTGGTTAAAGTTAGTGGGGTGAAGTCTCGTGGTGGTGGTGGTGGCGGCAGATCGAATTTTGGGAGAGAAAGAGAACGTTATTATCATCATAATGATGAAAGGAATGGAGATTGGGATCGTGGCAGAGATCGAGATGTTCGAGACCAAGATTATGATCATGGTAATGAGAAAGATGGATACAGGAATAGAGGTGGTGATTGGACTAGAGGCAGTGATTGCACTCGACATGCTGATAGGTCTCGAGACCGTGATAGGTCCCGTGACCGTGATAGGTCTCGAGACCATGACAGGGATAGGGATAGAAGAGTTGGGCATATGCAAGATTATGATGGTCAAATGTTAGTCCGTGATAGGTCTCGAGACCGTCAAATGTTAGTCCGTGATAGGTCTCGAGACCATGACAGGGATAGGGATAGAAGAGTTGAACACATGCAAGATTATGATGGTCAAGCTAGAGAAAGCATGATAGGCCGTGGTAGATCCCGAGACCATGATAGGGATAGGGATAGGGATAGAAGAGTTGAACATATGCAAGATTATGATGATCAAGCGAGAGAAAGCATGTTAGACCGGGATAGGTCCCGAGACCGTGACAGGGATAGGGGTAGAAAAGTTGAGCATTTGCAAGATTATGATGATCAAGCTAGAGAAAGCATTTTTGATCGTGATGGGTCCCGAGACCGTGACAGGGATAGAGGTAGAAGAGTTGAGCATTTGCAAGATTATGATAATCAAGCTAGAGAAAGCATGTTAGACCGTGATGGGTCCCGAGACCGTGACATGGATAGGGATAGAAGAGTTGAACATTTGCAAGATTATGATGATCAAGCTAGAGAAAGCATGTTAGATGGTGATTGGAATCATGATGATGATAGGGTTGAACATAGGGCTGTAAATGAACAAGAAAACAGCAGGGTACAAGGTGGAGATGTGGATAAGGACCGTAACTTAGATGCGGATACAGACAAAAAGATGGATATGATCAGTGATCCTGATAAATGTTTTGACGAACATAAAAAAGAACAGCCGAGGAGAAACATTGATTTGAATGTGACAAATCAAAATAGTTCATCAGATTCTATTGGGGACCACAATGATGAGGTAGAAGATGAATTAGAGAGGTCAATGCAGCTGCTTGATCAACTAAAAAACGAGGTTTCTAAGCTGGAAGAGGGATTGGAAGAGAGAAGACTTAATGTTATGGGGTTACAAAAGCACTCTAAGAAACTGGAGGATGCAGTGATTACTGCAAAGAAACAATCTTTATATCGCCAGATGCAGTTGACCAAGCTGCATGAATGTTTTCTGCAAATGCAAGATTCCACAGAAAGACTTAAAACCAGTGAAAAAGAACTCCAGGCTCTCGTTGATTCAGTAATGTTTGAGAGTGATGGTGATGGCGGTCTTGGACAACTTACAAATGGAAGTCTTGATGGTAGATAG 1668 0.4263 MTLDDDSSIYVGGLPYDANDETIRNVFNLYGAILDVKIINDQRTIGKCYCFVTFTNPRSAIDAINDMNGRTICGRVVKVSGVKSRGGGGGGRSNFGRERERYYHHNDERNGDWDRGRDRDVRDQDYDHGNEKDGYRNRGGDWTRGSDCTRHADRSRDRDRSRDRDRSRDHDRDRDRRVGHMQDYDGQMLVRDRSRDRQMLVRDRSRDHDRDRDRRVEHMQDYDGQARESMIGRGRSRDHDRDRDRDRRVEHMQDYDDQARESMLDRDRSRDRDRDRGRKVEHLQDYDDQARESIFDRDGSRDRDRDRGRRVEHLQDYDNQARESMLDRDGSRDRDMDRDRRVEHLQDYDDQARESMLDGDWNHDDDRVEHRAVNEQENSRVQGGDVDKDRNLDADTDKKMDMISDPDKCFDEHKKEQPRRNIDLNVTNQNSSSDSIGDHNDEVEDELERSMQLLDQLKNEVSKLEEGLEERRLNVMGLQKHSKKLEDAVITAKKQSLYRQMQLTKLHECFLQMQDSTERLKTSEKELQALVDSVMFESDGDGGLGQLTNGSLDGR* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4441 555 SMART rrm1_1 8 80 IPR000504 GO:0003723
Mal5g4441 555 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Mal5g4441 555 SUPERFAMILY RNA-binding domain, RBD 4 110 IPR035979 GO:0003676
Mal5g4441 555 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 258 - -
Mal5g4441 555 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 285 551 - -
Mal5g4441 555 Coils Coil 513 533 - -
Mal5g4441 555 Coils Coil 440 474 - -
Mal5g4441 555 MobiDBLite consensus disorder prediction 422 436 - -
Mal5g4441 555 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 285 551 - -
Mal5g4441 555 CDD RRM_SF 9 79 - -
Mal5g4441 555 MobiDBLite consensus disorder prediction 82 440 - -
Mal5g4441 555 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 258 - -
Mal5g4441 555 MobiDBLite consensus disorder prediction 94 421 - -
Mal5g4441 555 SMART rrm2_1 8 80 IPR003954 GO:0003676
Mal5g4441 555 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Mal5g4441 555 Gene3D - 2 100 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4441 Mal-Chr5 116112557 116116218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4441 7 80 Eukaryotic Initiation Factors Gene Family AT1G71770 28.378 3.41e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4441 - - mtr:MTR_4g113150 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4441 5 116112557 116116218 Mal5g4441 5 116112557 116116218 ECH