Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4440 ATGGCATCACCATCTGAACTAGGCTTGGATTGCAAGCCACATAGCTACTCCATGTTACTCAAATCAGTTGGAGAACAAAGTGATCAAAGCTACAAACTTGAAGAGTTTCTTTCTCGTTTAGAGGAAGAACGTCTCAAAATTGATGCTTTCAAGCGTGAGCTTCCTCTCTGCATGCAACTTCTCACAAACGCGATGGAGGCATCGAAGCAGCAACTTCAGGCTTTTAGAGTGAATCAAGGAGCAAAACCAATTCTAGAAGAATTCATACCAGTGAAGCAATTCACCTCATCAGAAACATTGGAAAAGACAACAAATAATAATAATGTATGTGATAAGGCAAATTGGATGACAAGTGCACAACTATGGAGCCAAACAAGTGAAGGAACAAAACAACAACAAAATTCCACAAAGGAAATAATTGATGATAACAATAATAATAACAACATTGGATTCAACATTAGTCCTAAACATAGAAATGGTGGAGCTTTTCTACCATTCTCAAAAGAAAGAAATAATAACTCATCATCTTGTCTTCCTGAATTAGCACTAGCTTCAACTCAAAAAGAAGAGGATAAGAAACATGTTGGAGAGGGAGAAAAAGGGAAAACAAATTCAGGGAATGAAGTTGATCATCAAGGAAAAGGGAGTCCAATAGCATCATCTCAAACTCAAACAACAAGCAACAATACAAACCAAACTCATAGGAAAGCAAGAAGGTGTTGGTCACCAGACTTGCACCGGAGATTTGTTAATGCTCTTCAAATGCTTGGTGGATCTCAAGTTGCAACACCAAAACAGATAAGGGAGTTGATGAAGGTTGATGGTTTGACCAATGATGAAGTTAAAAGCCATCTGCAGAAATATAGGCTACACACAAGAAGACCAAGTCCAAGTGCACAAAATGGTGCACCAGCAGCACAGCTAGTAGTTTTGGGAGGAATATGGGTCCCACCAGAATATGCAACTGCTGCTCATAATGGAGGAACCCCTACTCTCTATGGTGCACATCCTACTTCTCATCATCTCACTCTACCACACTACTGTACTGCTTCTGGCCAGGAGCAGTATTACACTACTGCACCGCCGCCGCAGCAGCTACTTCCGCCACCTCATCACATGCACCATGTCTACAAGGCCACGCCACACGGCCAGGGATCGCCGGAGACAGGTGGAGACGGGTTGGAGAGTATCGAGAATGGAAAGACGTCGGAGAGTAGTAGCTGGAAAGAGGGGAGTTCTGAGGATGAAGGAGAGAGGAAAGGGTTTGTTGAAGAGAGCAATGGGAGTGAAATCACTCTCAAATTTTAA 1308 0.4235 MASPSELGLDCKPHSYSMLLKSVGEQSDQSYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASKQQLQAFRVNQGAKPILEEFIPVKQFTSSETLEKTTNNNNVCDKANWMTSAQLWSQTSEGTKQQQNSTKEIIDDNNNNNNIGFNISPKHRNGGAFLPFSKERNNNSSSCLPELALASTQKEEDKKHVGEGEKGKTNSGNEVDHQGKGSPIASSQTQTTSNNTNQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSAQNGAPAAQLVVLGGIWVPPEYATAAHNGGTPTLYGAHPTSHHLTLPHYCTASGQEQYYTTAPPPQQLLPPPHHMHHVYKATPHGQGSPETGGDGLESIENGKTSESSSWKEGSSEDEGERKGFVEESNGSEITLKF* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4440 435 MobiDBLite consensus disorder prediction 359 435 - -
Mal5g4440 435 Coils Coil 33 53 - -
Mal5g4440 435 MobiDBLite consensus disorder prediction 122 154 - -
Mal5g4440 435 MobiDBLite consensus disorder prediction 408 425 - -
Mal5g4440 435 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 435 IPR044787 GO:0003700|GO:0006355
Mal5g4440 435 MobiDBLite consensus disorder prediction 122 157 - -
Mal5g4440 435 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 233 293 IPR017930 -
Mal5g4440 435 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 435 - -
Mal5g4440 435 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 236 291 IPR006447 GO:0003677
Mal5g4440 435 MobiDBLite consensus disorder prediction 185 207 - -
Mal5g4440 435 Coils Coil 58 78 - -
Mal5g4440 435 MobiDBLite consensus disorder prediction 184 237 - -
Mal5g4440 435 Gene3D - 235 293 - -
Mal5g4440 435 SUPERFAMILY Homeodomain-like 233 294 IPR009057 -
Mal5g4440 435 Pfam Myb-like DNA-binding domain 238 289 IPR001005 -
Mal5g4440 435 MobiDBLite consensus disorder prediction 208 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4440 Mal-Chr5 116107404 116109513 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4440 1 435 G2-like Transcription Factor Family AT2G03500 51.183 2.15e-121 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mal5g4440 Myb_DNA-binding 9.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4440 - - gmx:100807925 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4440 5 116107404 116109513 Mal5g4440 5 116107404 116109513 ECH