Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4436 ATGTCTCAATCCAAATGCGATGAACCTGATAAAATGTTGGATGCTTTTATCTACGATTACCTCGTGAAGAAACAAATGTATGAAACTGCAAGCGTATTTCATGATGAAGGCAATGTTGCACAGGATATTGTTATGGATGCAACTGGTGGTTCTCTCTTTGAGTGGTGGTCTGTTTTCTGGGAATTGTTTATGGCCAAACAAGGTTTTTCACACTCAGAACCAGTATTATCTTACCTTAAGGCTCAAGAAATGCGGAAGCAAGAAGAAGAGCAAGAGAAAATCCAGTTCCTATTGCAGAGCCCTGCTCAGCTGCAGCAATATGGGGCTGAAACTCAAGTTGTTGATGGCAATGTTCTTTGTCCCATAAGCAATGCTCCTATGGTGAGGCAGAACCGGAGTACTTCTAATACAATGGCAACAAAACTAAATGAGGACAGGTTGAAGTCTCCTCTACAGGGAAATGCTTTAGATGACATGACCATCAAGATAATGAAAGCTTATAACTGTGGTCAGCTTCCAATCGAGGATTGTGCCTTGTTGTTGAACGGAATAGCACCAATAACTGGTGGACAGGCTTCAGGACAAACATTGGCCAGTGCACTAAGCATTTTACAAGAGAATCTTCAACAAGATCAAAATCAGAACCAGCAACTTCCAGGGTTTACACAAGCCATGCACAGTGATATGAATGCAATGATGAGGTCTCGAGCTGTTGTTTCAGAAGGATCCTTTTACAGTGTTCATGGTTCAAATCAAGGTGGTAGTGACTTGACTCTGAAAGGGTGGCCTTTAGCAGGACTGGACGAGCATCATGCAGAACTTTTCCATAAGTTTAATTTGAGGCCGTCTTCACAATCTTCCAATCAATTTTCACCACGGCAGCAACTTATGGGTCAGGCACAGCAGAATTTAATTAATCCTTCTGTCAGTGGTTTCGATAGCAAAAGACCAAGGGTGCTTCTTAATAATCAAAATATGGTTCATGGGAAAGATGGCCAATCAAATTCTGTAGGTGGTTCCATTCCCAATATTGTAACACATGCACAAATTGGTTTCCCTGGATTGCCTCATCTGGACTTAGATATGACCCTTAAGGCTTCCAAAAGTCAAGTCGGGCGAAGTCAAAAACAAAAACTAGGATCATATTCAGGTCTTGCCAATAGCTCTGGAACTGCAAACACAATGGGATCATCTTCTGGTTCACCTTCTACTATGCAGACACCACTGCCAACTCGGCAACAAAATTATTGGGGCTCAGTTGCATCAACACAGAATCAGTTGGCTGATATGGACCATCTCAAGAGTGATGGATCTTTGGCTGATAATTTTGAGTCATTCTCATCTCTTGCTGATGCTGACCGTAAAGGACGAGTTCGCAAAGGATTCTCATTTAATGAGATCAAGCACGGATTGGCTAGTTCACATAAAGTTGACTGTTGTCACTTCTCCTCGGATGGAAAACTACTTGTTACCGGTGGTCATGATAAAAAGGCTTCAATTTGGTGCACAAAATTGTTTAATCTGAAATCTACACTTGACGAGCACACTCAACGGATAACTGATGTTAGATTTTGTCCAAGCATGTTGTGTGTTGCTACGTCCTCAGCCGACAAAACTGTAAAGGTTTGGGATGTTAAAAATCCTAGTCATTCTCTTCGGACATTTACAGGGAATACAGCTGTGCTGTCAATAGACTTTCATCCAAGTAATGATGACCTTATTTGCTGTTGTAATAATAAGGAGATAAGATATTGGAGTGTTGGAAATGGTAGTTGTGTTGGGCTTTTCAAGGGTAGTGTAACTCAGGTGAGATTTCAACCTGGTTTGGGAAAGCTTCTTGCAGCAGTAGTAAATAATGCAATACTCATGCTTGACTCAGAAACTCTGAGTTGCAGATTTAAATTGCAGGACCACAAGAGCCTTGTTCGTTCAGTGTGCTGGCACTCTTCTGGAAATTATCTGGCATCTGTTTGTGATGATCTGGTTAAAATCTGGGCCGTTGGATCTGATAGCAGTGGGGCATGTATTCAGCAATTGAATGCAGCTGGGACTGAGAACAAATTCAAGACCTGTGTTTTCCATCTCATCTATAATGTTTTGATCATTAGCTGCGATAAGTCGCTTATGCTCTGGAACTTTATGGAGAGCAAACAAATTACTCTGCCTGCGCATGACAAGCTTGTATCTGCCTTGGCAGTATCCGATGTTACTGGATTGGTGGCTTCAGTTAGTCATGATACGAGTTTCAAGATCTGGAAGTGA 2262 0.4173 MSQSKCDEPDKMLDAFIYDYLVKKQMYETASVFHDEGNVAQDIVMDATGGSLFEWWSVFWELFMAKQGFSHSEPVLSYLKAQEMRKQEEEQEKIQFLLQSPAQLQQYGAETQVVDGNVLCPISNAPMVRQNRSTSNTMATKLNEDRLKSPLQGNALDDMTIKIMKAYNCGQLPIEDCALLLNGIAPITGGQASGQTLASALSILQENLQQDQNQNQQLPGFTQAMHSDMNAMMRSRAVVSEGSFYSVHGSNQGGSDLTLKGWPLAGLDEHHAELFHKFNLRPSSQSSNQFSPRQQLMGQAQQNLINPSVSGFDSKRPRVLLNNQNMVHGKDGQSNSVGGSIPNIVTHAQIGFPGLPHLDLDMTLKASKSQVGRSQKQKLGSYSGLANSSGTANTMGSSSGSPSTMQTPLPTRQQNYWGSVASTQNQLADMDHLKSDGSLADNFESFSSLADADRKGRVRKGFSFNEIKHGLASSHKVDCCHFSSDGKLLVTGGHDKKASIWCTKLFNLKSTLDEHTQRITDVRFCPSMLCVATSSADKTVKVWDVKNPSHSLRTFTGNTAVLSIDFHPSNDDLICCCNNKEIRYWSVGNGSCVGLFKGSVTQVRFQPGLGKLLAAVVNNAILMLDSETLSCRFKLQDHKSLVRSVCWHSSGNYLASVCDDLVKIWAVGSDSSGACIQQLNAAGTENKFKTCVFHLIYNVLIISCDKSLMLWNFMESKQITLPAHDKLVSALAVSDVTGLVASVSHDTSFKIWK* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4436 753 SMART WD40_4 628 666 IPR001680 GO:0005515
Mal5g4436 753 SMART WD40_4 714 753 IPR001680 GO:0005515
Mal5g4436 753 SMART WD40_4 505 544 IPR001680 GO:0005515
Mal5g4436 753 SMART WD40_4 548 586 IPR001680 GO:0005515
Mal5g4436 753 SMART WD40_4 589 625 IPR001680 GO:0005515
Mal5g4436 753 SMART WD40_4 672 712 IPR001680 GO:0005515
Mal5g4436 753 SMART WD40_4 463 502 IPR001680 GO:0005515
Mal5g4436 753 ProSiteProfiles LIS1 homology (LisH) motif profile. 9 41 IPR006594 GO:0005515
Mal5g4436 753 Gene3D - 597 753 IPR015943 GO:0005515
Mal5g4436 753 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 721 753 - -
Mal5g4436 753 ProSiteProfiles Trp-Asp (WD) repeats profile. 721 753 IPR001680 GO:0005515
Mal5g4436 753 Pfam WD domain, G-beta repeat 631 665 IPR001680 GO:0005515
Mal5g4436 753 Pfam WD domain, G-beta repeat 474 501 IPR001680 GO:0005515
Mal5g4436 753 Pfam WD domain, G-beta repeat 717 753 IPR001680 GO:0005515
Mal5g4436 753 Pfam WD domain, G-beta repeat 508 544 IPR001680 GO:0005515
Mal5g4436 753 Pfam WD domain, G-beta repeat 552 586 IPR001680 GO:0005515
Mal5g4436 753 PANTHER LISH-SSDP-WD40 6 367 - -
Mal5g4436 753 PANTHER LISH-SSDP-WD40 367 753 - -
Mal5g4436 753 Pfam LisH 11 36 IPR006594 GO:0005515
Mal5g4436 753 ProSiteProfiles Trp-Asp (WD) repeats profile. 512 553 IPR001680 GO:0005515
Mal5g4436 753 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 367 753 IPR044716 GO:0003714
Mal5g4436 753 Gene3D - 447 596 IPR015943 GO:0005515
Mal5g4436 753 ProSitePatterns Trp-Asp (WD) repeats signature. 531 545 IPR019775 -
Mal5g4436 753 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 6 367 IPR044716 GO:0003714
Mal5g4436 753 SUPERFAMILY WD40 repeat-like 461 753 IPR036322 GO:0005515
Mal5g4436 753 MobiDBLite consensus disorder prediction 369 411 - -
Mal5g4436 753 CDD WD40 474 753 - -
Mal5g4436 753 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 512 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4436 Mal-Chr5 115995176 116008146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4436 471 692 Miscellaneous Gene Families AT5G08390 25.000 1.39e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Mal5g4436 WD40 0.28 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4436 - - mtr:MTR_4g113080 1155.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4436 5 115995176 116008146 Mal5g4436 5 115995176 116008146 ECH