Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4424 ATGTCATCAAGTGGAGCCATTTGGAGCTATGAAGAAGAAAAAGCATTTGAGAATGCTATAGCCATGCATTGGATTGAAAAAGAAGATTCAAAAGAACAATGGGAAAAGATTGCTTCATATGTCCCCAACAAAAGTATGGAACAAGTGAAACAACATTACCAAGTATTGGTAGATGATGTTAGTGCAATTGAGGAAGGTCATGTATCATTGCCAAATTATGCTAATGAATTAGAAACTATTAATTCTTCAAATAAAGATTCTTCTAAGGCTACCACAAGTTCAGATAAGAGATCAAGTTGTAATTTTGGAAGTGGGTTTTCTGGATTAGGACATGACTCCACACACCATAGTAGTGGTAAAGGTGGATTGTCAAGGTCATCAGCATCAGAACAAGAAAGGAGAAAAGGAATTCCATGGACAGAAGAAGAGCATAGGTTATTTTTACTTGGTTTAGACAAATTTGGAAAAGGAGATTGGAGGAGTATATCAAGGAACTTTGTGATATCTAGGACACCAACACAAGTAGCAAGTCATGCACAAAAGTATTTTATAAGGTTGAATTCAATGAATAGAGATAGAAGAAGATCTAGTATTCATGATATTACTAGTGTTAACAATGGAGATGTAGCTAGTAATCATCAAGCACCAATAACAGGACAACATGGTAACACAATCCCTTCAAATACAATGGGTTTAGGACAATCAATGAAGCATAGAGTTCAGCCTCATCATCCTCCAGGTGGTTTAGGAATGTATGGAGCACCAGTTGGACATCCTGTTGTTGCTCCTCCTGCTCATATGGCATCTGCAGTTGGGACTCCTGTTATGCTTCCTCATCATCATCCACCTTATGTTGTGCCTCTTGCTTACCCTATGGCACCTCCAACAATGCACCAATAA 900 0.38 MSSSGAIWSYEEEKAFENAIAMHWIEKEDSKEQWEKIASYVPNKSMEQVKQHYQVLVDDVSAIEEGHVSLPNYANELETINSSNKDSSKATTSSDKRSSCNFGSGFSGLGHDSTHHSSGKGGLSRSSASEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASNHQAPITGQHGNTIPSNTMGLGQSMKHRVQPHHPPGGLGMYGAPVGHPVVAPPAHMASAVGTPVMLPHHHPPYVVPLAYPMAPPTMHQ* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4424 299 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 135 185 IPR006447 GO:0003677
Mal5g4424 299 ProSiteProfiles Myb-like domain profile. 8 57 IPR001005 -
Mal5g4424 299 PANTHER TRANSCRIPTION FACTOR MYBS1 1 298 - -
Mal5g4424 299 Gene3D - 1 70 - -
Mal5g4424 299 ProSiteProfiles SANT domain profile. 3 53 IPR017884 -
Mal5g4424 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 187 IPR017930 -
Mal5g4424 299 SUPERFAMILY Homeodomain-like 133 188 IPR009057 -
Mal5g4424 299 Gene3D - 137 189 - -
Mal5g4424 299 SUPERFAMILY Homeodomain-like 7 61 IPR009057 -
Mal5g4424 299 CDD SANT 138 183 IPR001005 -
Mal5g4424 299 Pfam Myb-like DNA-binding domain 8 56 IPR001005 -
Mal5g4424 299 Pfam Myb-like DNA-binding domain 138 183 IPR001005 -
Mal5g4424 299 MobiDBLite consensus disorder prediction 105 137 - -
Mal5g4424 299 CDD SANT 8 57 IPR001005 -
Mal5g4424 299 SMART sant 4 59 IPR001005 -
Mal5g4424 299 SMART sant 135 185 IPR001005 -
Mal5g4424 299 ProSiteProfiles Myb-like domain profile. 131 183 IPR001005 -
Mal5g4424 299 MobiDBLite consensus disorder prediction 105 126 - -
Mal5g4424 299 ProSiteProfiles SANT domain profile. 139 187 IPR017884 -
Mal5g4424 299 PANTHER TRANSCRIPTION FACTOR KUA1 1 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4424 Mal-Chr5 115797936 115799068 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal5g4424 Myb_DNA-binding 3.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4424 - - gmx:778049 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4424 5 115797936 115799068 Mal5g4424 5 115797936 115799068 ECH