Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4423 ATGAGCTGGAGTAGGGTGTTGAAATCAGCGCAGGCCTTCGCCGCTCACACTTTTCTTTTGTGTTTCACTCTTTTACTCCTTCTCAAGCTTGATCATCGCATCTCTTCCTCTTGGTGGATAATTTTTGTACCTCTTTGGATGTTCCATGGCGTTGTGGCTCGAGGAAGGTTTTCATTACCTGCGCCATCAGCTCCGCGTAATCGACATTGGGCGCCATGTCACGCTGTTGTTGCAATGCCATTGCTTATTGCGTTTGAATTGCTCCTTTGTATATACCTTGAGAGCTTATATGTTCGTGGCTTTGCGGCAGTAGATCTGAAGATTGTGTTCCTTCCTTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAGAATGTGTAAAGCTCTAATGCCAGGGGATGAAGAAAGCATGAGTGATGAAGCAATATGGGAAACCCTTCCTCACTTTTGGGTTGCCATTTCTATGGTGTTCTTCGTTGCTGCTACAGTCTTCACACTCCTAAAACTGAGTGGTAGTGTAGCTTCTCTCGGTTGGTGGGACTTATTCATTAACTTCACTATTGCCGAGTGCTTTGCATTTCTTGTATGTACAAAGTGGTCCAATCCTGTCATTCATAGAAGTTCCAGAGAACCGAGTTCTTCTACTACTACAATTAGATATCTAGATTGGAACAGTGGTTTAGTGGTTTCTTCGGAAGAAGATCAACGTCAGGCAGGAATTTGTAGCCTGCAAGACATAGGGGGTCATTTCATGAAAGTACCGGTTATTGTTTTCCAGGTTCTTCTTTGCATGCATTTAGAGGGAACACCTGCTTTTGCTGCACATTTACCTCTTGCAGTTCTTTTCTCTCCTCTTTTCGTACTGCAAGGTGTTAGTGTGCTGTTATCTGCGTCTAAATTTGTGGAGAAGCTTGTGCTTCTTCTGCGAAGTGGAGCTGGTGGAGGACTTTATTTTAGATTATCTTCCAGAGCTCACGATTGTTTGGGGTTCTTGCACCATGGTTCTAGATTACTAGGCTGGTGGTCAATCGATGAAGGGAGTCGGGAAGAACAGGCACGATTGTACCATGAAGGGGCATCTGGGTATAATACGTTCAGCGGTTACCCTCCTGAGATTGTTAAGAAAATGCCTAAAAGGGATCTTGCTGAGGAGGTGTGGAGACTCCAGGCAGCTCTTGGCGAGCAGACGGAAATTACAAAATACAGCCAACAGGAATATGAAAGACTTAAAAATGAGAAAGTGCTGTGCCGAATTTGTTTCGAGGGAGAGATTAGCGTTGTATTACTCCCATGTAGACATCGTGTCCTTTGCAACTTATGCTCGGAGAAGTGTAAGACGTGCCCAATTTGCCGCAACTATATTGCAGAGCGCTTGCCCGTATATGATGTCTAA 1398 0.4399 MSWSRVLKSAQAFAAHTFLLCFTLLLLLKLDHRISSSWWIIFVPLWMFHGVVARGRFSLPAPSAPRNRHWAPCHAVVAMPLLIAFELLLCIYLESLYVRGFAAVDLKIVFLPLLTFEIIILIDNFRMCKALMPGDEESMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLSGSVASLGWWDLFINFTIAECFAFLVCTKWSNPVIHRSSREPSSSTTTIRYLDWNSGLVVSSEEDQRQAGICSLQDIGGHFMKVPVIVFQVLLCMHLEGTPAFAAHLPLAVLFSPLFVLQGVSVLLSASKFVEKLVLLLRSGAGGGLYFRLSSRAHDCLGFLHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFSGYPPEIVKKMPKRDLAEEVWRLQAALGEQTEITKYSQQEYERLKNEKVLCRICFEGEISVVLLPCRHRVLCNLCSEKCKTCPICRNYIAERLPVYDV* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4423 465 ProSiteProfiles Zinc finger RING-type profile. 418 453 IPR001841 -
Mal5g4423 465 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 465 - -
Mal5g4423 465 SMART ring_2 418 452 IPR001841 -
Mal5g4423 465 Pfam Zinc finger, C3HC4 type (RING finger) 415 457 - -
Mal5g4423 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 463 IPR013083 -
Mal5g4423 465 Pfam Transmembrane Fragile-X-F protein 28 290 IPR019396 -
Mal5g4423 465 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 465 - -
Mal5g4423 465 SUPERFAMILY RING/U-box 410 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4423 Mal-Chr5 115780391 115787792 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4423 1 465 C3H Transcription Factor Family AT1G73950 72.258 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4423 - - gmx:100791390 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4423 5 115780391 115787792 Mal5g4423 5 115780391 115787792 ECH