Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4404 ATGGCAGAACCAGAAATCAGTCTCCAAGCTTCTTCACCTATGAACGAAACCAATAACAAGAACAAAAGCAAGAAGAAGAAAAAGCACGACAAGAAGAGACCCCGTGATACTGTTGAAGAGGAGGAACACGCAGAAGAGAATGTGAATGATATTCATAGTAATGGAGAATCCTCAAAGAAGAAGAAGAAGAAGAAAGTGGAGGAGGAGGAGGAGGTTGTTGAAGTAGAAGTAGAAGATGAATTGGAAGAGAAAAAGGTGAAGAATAACAAAGGTTCTGGAATTCTGAGTTCTGAATCATTTTCTTCACTGGAATTATCTGAACCTACTTCTAAAGCTATTATTGATATGAAATTTCAATACTTAACTCAGATTCAAGCAAGAGCAATTCCACCACTTCTGAGTGGAAAAGATGTTCTTGGTGCTGCGAGGACTGGTTCTGGAAAAACTCTTGCCTTTTTAATTCCTGCTGTGGAGCTCTTGCACAAGCTTAAGTTTAATGCTCGAAGTGGAACTGGAGTTGTTGTCATATGCCCCACTAGAGAGCTTGCTATTCAGACACATGTTGTTGCCAACGATCTTCTAAAGTATCATCATTCTCAATCTCAATCTCCAACTCTTGGATTGGTTATTGGAGGTAGCGCTAGAAAAACTGAAGCTGTAAACCTTGCTAAAGGGATAAATATATTGGTAGCTACTCCTGGTCGTCTTCTGGATCATCTACAAAATACCAAGAGATTCATATATAATAACCTGAAGTGCCTCATTATCGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGATGAATTGAAGCAGATTATCAAGCTCCTCCCAAAGAACAGACAGACGGCTTTATTTTCAGCTACACAAACAAAGAAGGTTGAAGATCTTGCTCGCTTGTCATTTCAGACGACTCCTATCTATATTGATGTAGATGATGGGAGAAAGAAGGTCACAAATGAAGGGTTGCTTCAGGGTTATGTTGTTGTTCCCTGTGCCAAGCGATTTATGGTTCTCTATTCCTTCTTGAAGAGGCATCAATCGAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACAGTGTCAAATTCCATGCAGACATTTTTAATCACATTCATTTGCATTGTGCAAGTATTTACGGAAAACAAAAGCAGCAGACCCGGACAACAACTTTCTTTGACTTCTGCAAAGCAGAAAAGGGGGTCTTGCTCTGTACCGACGTTGCTGCTCGTGGATTGGACATACCTTCCGTGGACTGGATTTTGCAGTACGACCCACCTGATGAACCAAAGGAATATATCCACAGGGTCGGTAGAACAGCTCGTGGGGAGAATGGAAAAGGCAATGCTTTACTTTTCCTGATTCCCGAAGAGTTGCAATTTCTTCGCTATCTGAAGGAAGCTAAGGTCCCTGTCAAAGAATACGCTTATGATGAAAAGAAGGTGGCAAACGTACAGTCTCACCTGGAAAATTTGGTTGCTGAAAATTATTTTTTGAACAAAATGGCTAAAGAAGCGTATAGATCATACATATTAGCATACGATTCACATTCTATGAAGGATATATTCAGTGTTCAACGTCTTGATATGCAGGCTGTTGCTGCTTCATTCTGTTTTTCGAACCCTCCAAATGTGAGTTTAAATATAAACTTCAACAAGCAAAGGAAGAAAACACGTAAAGTTGATGGTGGTAGACACGGATTCAATCCCAATAATCCTTATGGAAAGCGAAATGCTGATGATAAGCGGCAGTTTGTGAGGCATTAA 1767 0.4007 MAEPEISLQASSPMNETNNKNKSKKKKKHDKKRPRDTVEEEEHAEENVNDIHSNGESSKKKKKKKVEEEEEVVEVEVEDELEEKKVKNNKGSGILSSESFSSLELSEPTSKAIIDMKFQYLTQIQARAIPPLLSGKDVLGAARTGSGKTLAFLIPAVELLHKLKFNARSGTGVVVICPTRELAIQTHVVANDLLKYHHSQSQSPTLGLVIGGSARKTEAVNLAKGINILVATPGRLLDHLQNTKRFIYNNLKCLIIDEADRILEANFEDELKQIIKLLPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRKKVTNEGLLQGYVVVPCAKRFMVLYSFLKRHQSKKVMVFFSSCNSVKFHADIFNHIHLHCASIYGKQKQQTRTTTFFDFCKAEKGVLLCTDVAARGLDIPSVDWILQYDPPDEPKEYIHRVGRTARGENGKGNALLFLIPEELQFLRYLKEAKVPVKEYAYDEKKVANVQSHLENLVAENYFLNKMAKEAYRSYILAYDSHSMKDIFSVQRLDMQAVAASFCFSNPPNVSLNINFNKQRKKTRKVDGGRHGFNPNNPYGKRNADDKRQFVRH* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4404 588 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 129 309 IPR014001 -
Mal5g4404 588 PANTHER RNA HELICASE 53 582 - -
Mal5g4404 588 SMART DUF4217_3 484 547 IPR025313 -
Mal5g4404 588 MobiDBLite consensus disorder prediction 1 84 - -
Mal5g4404 588 Pfam Domain of unknown function (DUF4217) 485 545 IPR025313 -
Mal5g4404 588 SMART ultradead3 117 327 IPR014001 -
Mal5g4404 588 Pfam DEAD/DEAH box helicase 122 298 IPR011545 GO:0003676|GO:0005524
Mal5g4404 588 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 255 263 IPR000629 -
Mal5g4404 588 MobiDBLite consensus disorder prediction 33 70 - -
Mal5g4404 588 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 336 493 IPR001650 -
Mal5g4404 588 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 53 582 - -
Mal5g4404 588 Pfam Helicase conserved C-terminal domain 339 443 IPR001650 -
Mal5g4404 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 458 IPR027417 -
Mal5g4404 588 Gene3D - 44 313 IPR027417 -
Mal5g4404 588 Gene3D - 324 561 IPR027417 -
Mal5g4404 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 311 IPR027417 -
Mal5g4404 588 SMART helicmild6 363 444 IPR001650 -
Mal5g4404 588 Coils Coil 58 83 - -
Mal5g4404 588 MobiDBLite consensus disorder prediction 556 588 - -
Mal5g4404 588 CDD DEADc_DDX18 109 311 IPR044773 GO:0003724|GO:0005524
Mal5g4404 588 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 98 126 IPR014014 GO:0003724
Mal5g4404 588 CDD SF2_C_DEAD 324 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4404 Mal-Chr5 115455195 115462261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4404 98 458 Eukaryotic Initiation Factors Gene Family AT1G72730 30.137 3.19e-43 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4404 K13179 - gmx:100797375 874.004