Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4398 ATGGATCCCATGGATATCGTTGGCAAATCGAAGGAAGATGCTTCGCTTCCTAAAGCAACGATGACAAAAATAATTAAGGAGATGTTACCGCCAGATGTTCGTGTTGCAAGAGACACCCAAGATCTGTTGATTGAGTGCTGTGTAGAGTTTATAAATCTCATCTCATCAGAGTCCAATGAAGTATGCAGCAGAGAGGACAAACGGACGATTGCACCTGAGCACGTATTGAAGGCTCTACAGGTGCTTGGATTTGGTGAGTACATTGAAGAAGTTTATGCTGCATACGAACAACACAAGCTGGAGACCATGGATTCTTTGAAAGCTGGTAAATGGAGCAATGGAGCTGAGATGACTGAGGAACAAGCATTAGCAGAACAACAAAGAATGTTTGCAGAGGCCCGTGCTAGAATGAATGGTGGGGCCATTGCTCCCAAGCAGCCAGATGGTGACCAAAGTTTAGATAGCTAA 468 0.4444 MDPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLISSESNEVCSREDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKLETMDSLKAGKWSNGAEMTEEQALAEQQRMFAEARARMNGGAIAPKQPDGDQSLDS* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4398 155 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Mal5g4398 155 Gene3D Histone, subunit A 4 141 IPR009072 GO:0046982
Mal5g4398 155 PANTHER PROTEIN DR1 HOMOLOG 1 154 IPR044255 -
Mal5g4398 155 SUPERFAMILY Histone-fold 12 141 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4398 Mal-Chr5 115391058 115395064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4398 1 151 CCAAT-DR1 Transcription Factor Family AT5G23090 83.117 1.73e-92 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mal5g4398 CBFD_NFYB_HMF 9.5e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4398 K21751 - qsu:111997108 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4398 5 115391058 115395064 Mal5g4398 5 115391058 115395064 ECH