Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4394 ATGGAAGACACAGACACCTTAAAATTTCCACACCAAAGTAACAAAAACAACAATATTTCTTTGATCCCTCATGAAATAGACAAGTCCTATGAGAAGAACAAAGAAAGGATCAGTATTAAGAAGATTCCAAAAACATCAAACAAGTGTCATCAGAAAAAGTATCTAGGAGTGAGACAAAGGCCATCAGGAAGATGGATAGCTGAGATAAAAGACTCATCACAGAAACTAAGACTATGGTTAGGAACATTTGACAGAGCAGAAGATGCTGCTCTGTCTTATGACTCTGCTGCAAGGCTTCTTAGAGGAAGAAATGCGAAAACAAATTTTCCAAATACTCATGAACAAGATTTCACCATTTTAGGAAAGAATCCTAGAGCTTTTCAGCTTCTTAAGCATGCAGTGATGAAGAACCATGCAGTTTCTTCATCGTCATCGGTTTATTCCACTGTCATGATGCCATGGAAAAATGATCAACTTGACGCGATTGTTGAGGAAACGATTTTTTGTTCTGTTCCTGATGTTGAAGGTTCTGCTGTAGGGTGTAGTGGAATTTCATTTGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTTGCTCCTTCTTTTAGTGCTTCTTAA 615 0.374 MEDTDTLKFPHQSNKNNNISLIPHEIDKSYEKNKERISIKKIPKTSNKCHQKKYLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDRAEDAALSYDSAARLLRGRNAKTNFPNTHEQDFTILGKNPRAFQLLKHAVMKNHAVSSSSSVYSTVMMPWKNDQLDAIVEETIFCSVPDVEGSAVGCSGISFGSSKVYSSVVVAPSFSAS* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4394 204 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Mal5g4394 204 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 204 - -
Mal5g4394 204 SUPERFAMILY DNA-binding domain 53 111 IPR016177 GO:0003677
Mal5g4394 204 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Mal5g4394 204 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Mal5g4394 204 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Mal5g4394 204 Pfam AP2 domain 53 102 IPR001471 GO:0003700|GO:0006355
Mal5g4394 204 CDD AP2 52 112 IPR001471 GO:0003700|GO:0006355
Mal5g4394 204 Gene3D AP2/ERF domain 52 111 IPR036955 GO:0003700|GO:0006355
Mal5g4394 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110-LIKE 1 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4394 Mal-Chr5 115317883 115318497 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4394 34 111 AP2-EREBP Transcription Factor Family AT5G19790 55.128 9.74e-26 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal5g4394 AP2 1.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4394 - K09286 gmx:100807374 243.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4394 5 115317883 115318497 Mal5g4394 5 115317883 115318497 ECH