Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4380 ATGGGAAGCGACAGTGAAGGTGAGAAATCGGTCCTGAGAGAGAAGGAGAGGAAGAAGATGCTTGCACTAGCTCCCATTGCAAAACCTCTTGCTGGGAAGAAGCTTTCCAAGAAAACACTCAAGCTTGTCAAAAGAGCTGCTGAAAACAAATGCATAAAGAGAGGAGTTAAGGAGGTGGTTAAAAGTATAAGGCGGGGTCAAAAAGGAGTGTGTATTATAGCTGGGAACATATCGCCCATTGATGTCATTACTCATGTTCCAATTCTATGCGAAGAAAATCAGATTCCATATGTATATGTCCCATCTAAAGAAGACCTTGCAACTGCAGGAGCAACAAAGAGGCCTACTTGTTGTGTTTTAGTGATGACCAAGCCTTCAAAGGGTGAACTATCTCAAGAGGTACAAGAGAAACTAAAGTCAGAGTATGATCAAGTTGCATCCGAGTGTACTGAGCTTCAGGCTACAGTTTTTTGA 474 0.4241 MGSDSEGEKSVLREKERKKMLALAPIAKPLAGKKLSKKTLKLVKRAAENKCIKRGVKEVVKSIRRGQKGVCIIAGNISPIDVITHVPILCEENQIPYVYVPSKEDLATAGATKRPTCCVLVMTKPSKGELSQEVQEKLKSEYDQVASECTELQATVF* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4380 157 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 39 123 IPR004038 -
Mal5g4380 157 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 3 154 - -
Mal5g4380 157 PRINTS Ribosomal protein L7A/RS6 family signature 97 111 IPR018492 -
Mal5g4380 157 PRINTS Ribosomal protein L7A/RS6 family signature 52 66 IPR018492 -
Mal5g4380 157 PRINTS Ribosomal protein L7A/RS6 family signature 71 84 IPR018492 -
Mal5g4380 157 PRINTS Ribosomal protein L7A/RS6 family signature 87 97 IPR018492 -
Mal5g4380 157 SUPERFAMILY L30e-like 18 140 IPR029064 -
Mal5g4380 157 PANTHER - 3 154 - -
Mal5g4380 157 Gene3D - 18 145 IPR029064 -
Mal5g4380 157 PRINTS High mobility group-like nuclear protein signature 38 53 IPR002415 GO:0003723|GO:0005730
Mal5g4380 157 PRINTS High mobility group-like nuclear protein signature 25 38 IPR002415 GO:0003723|GO:0005730
Mal5g4380 157 PRINTS High mobility group-like nuclear protein signature 55 65 IPR002415 GO:0003723|GO:0005730
Mal5g4380 157 PRINTS High mobility group-like nuclear protein signature 99 111 IPR002415 GO:0003723|GO:0005730
Mal5g4380 157 Coils Coil 135 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4380 Mal-Chr5 115215790 115217817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4380 52 143 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 25.806 8.68e-07 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4380 K11129 - gmx:100305515 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4380 5 115215790 115217817 Mal5g4380 5 115215790 115217817 ECH