Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4370 ATGGCTGATGTAACCTATCTCCGTCGTCACCACCACCACGAACCCGACGATGATCAAACCCTAATCCCTTTACCCTATTGGACTTCCCCTTCCGATCTCGACTTCGATTTCGATCTTTACTCTTCCGATCCCGAATTCCCATCCAACCACCACTTCTCTCGCGAAAATTTCGTAATGGATCTTTTTCAACAACGTGTCGAACAATCTCAAATCACCAATCACACCGATCCAATTCACCAATCGCTAAACGACTCCGTTTTCGATAGTTTAAGTTTCGAATTAGGGTTCAACCCTTCCGATCTTCATCTCGATCTCAATATCGCCGCTGAAGATGACGATGATGATTTCCCCGATGCGACGGTTTCAAGATCCGATCCAATTAACTGTTTACGTATCGTGGAAATTGATTCGGATTCCGACGCTGAAGAAGATGCAAACAATGTGTTTTGTGGAATCTGTGTGCATTCTGATGCTGATGAAGAAGATTTTAACAATGTAATTGATGAAGAAATTGGGAGTTTTCCTCTCCGTTGGGATTCGCTTCATTTGGATGATGATCCTCAAGTTTATGAAGATTTTGAGTGGGAGGAAGTTGATGGTGGTGGATTTGATGATAGGGAAATTCTTGGTATGTTGTTTGCCGATGATGATAATGATAACGATAATGATAACAATAGGTCAGTTAATACCGGTCGCGCTCGTGCTATTCCGTATTTTGAAGAAGAAGAAGAACATGATTTAGGAGATGAAGAAGAGGTTACCATGTTGAGGGTTGATGGAGAAGAGGCTAACATGATGAGGGTTGGTGGGGGAAATGAAAATCTTGATTGGCAAGTGTTGTTGAATTCTGCTGGTCCTGATACCTATCATGTAATTTCAGAGCCTGATTTTGGTGACAATGATGATTACATTTACACTGCAGAGTATGAGATGATGTTTGGTCAATTCGCGGATAATGTGAACTCGTTTACCAGTAAGCCACCGGCTTCTGTAGCGTTTGTTGAGAATCTTCCGTCGGTGGTTGTGACTAAAGAGGATGTGGATAACAACAATGCACTGTGTGCGGTTTGTAAAGATGATTTTGCTGTTGAAGAAGAGGTGAAGTCGTTGCCGTGTTCTCATCGTTATCATGGCGATTGCATTGTGCCTTGGTTGGGGATTAGGAATACTTGTCCTGTTTGCCGCTGTGAGTTTCCTACTGATGATGCTGATTATGAACGTAGGAAAGCACCAATGTTGGCTCGGAGCGCTTGA 1254 0.429 MADVTYLRRHHHHEPDDDQTLIPLPYWTSPSDLDFDFDLYSSDPEFPSNHHFSRENFVMDLFQQRVEQSQITNHTDPIHQSLNDSVFDSLSFELGFNPSDLHLDLNIAAEDDDDDFPDATVSRSDPINCLRIVEIDSDSDAEEDANNVFCGICVHSDADEEDFNNVIDEEIGSFPLRWDSLHLDDDPQVYEDFEWEEVDGGGFDDREILGMLFADDDNDNDNDNNRSVNTGRARAIPYFEEEEEHDLGDEEEVTMLRVDGEEANMMRVGGGNENLDWQVLLNSAGPDTYHVISEPDFGDNDDYIYTAEYEMMFGQFADNVNSFTSKPPASVAFVENLPSVVVTKEDVDNNNALCAVCKDDFAVEEEVKSLPCSHRYHGDCIVPWLGIRNTCPVCRCEFPTDDADYERRKAPMLARSA* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4370 417 CDD RING-H2_RNF126_like 354 395 - -
Mal5g4370 417 PANTHER - 303 410 - -
Mal5g4370 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 401 IPR013083 -
Mal5g4370 417 ProSiteProfiles Zinc finger RING-type profile. 354 395 IPR001841 -
Mal5g4370 417 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 303 410 - -
Mal5g4370 417 SUPERFAMILY RING/U-box 333 401 - -
Mal5g4370 417 SMART ring_2 354 394 IPR001841 -
Mal5g4370 417 Pfam Ring finger domain 354 395 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4370 Mal-Chr5 115100633 115101886 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4370 8 401 C3H Transcription Factor Family AT5G60820 33.784 3.85e-49 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4370 - - mtr:MTR_4g110100 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4370 5 115100633 115101886 Mal5g4370 5 115100633 115101886 ECH