Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4369 ATGTCGACTTCGTTGCCTACCTCAAATAAACGCCCCAAATCCGAAGTGAAAACAGAAGAAGAAGAAGAAGAAGACAATGACAATAACCAAGATGATTGCTGCGGAATTTGCTACATCGAACGCGGAATTTCAGTCCCGGCGGAAATTGATTGCTGCAACCATTACTTTTGCTTTGTTTGCATCATGGAATGGGCCAAACATGAATCTCGATGCCCACTATGTCGCCAGAGATTCTCAAACGTTCGTAGACTCCCTAAGCATGGCATATTCACTTCCTCTCGGGACGTTAAGGTCCCTCTTCGTGACCAGGTTTATCATCCTCATGGAAATATGACAAGTGGTCCTGTTGATTCTAATGCTGAACTCAACTGCAGTATTTGCGATGGGGCAAAAGAAGAAAATCTTATACTAATATGTGATCTTTGTGATACTGCTTCGCATACATTTTGCGTTGGCTTGGGCTACACCGTTCCTGAAGGTGATTGGTTTTGTCATGATTGTGCTGTTTCCCTGGAGACTAATGCTAATTATATGTTAGAACAACAAAATGTTGAGCTAAAAGCGGAGCCTGGTGTAACCACCTTAAATATTGTGAGAGGAACAAGCAGCCAAGTGATTCGAAGACCTATGGCATCTCCTTTACAACAAAACAATTCTTTGTCTTCTGAAATTCCTTTACTTGATAGGGTGAGCAGATCCGAAGGTAAAAAACCTGTGTCAGAAGTCCAGCGTGCGCTGCGTAATGTTCAGCTGCTTCGTGAAAATTGGAATTCTTTAAGAAGTGGTAAATTAAGGTTCCATAGCAAATCATTTCAATCTGGTGGTACAAGTAGTCAAAAAGAAAATTCTAGTTCTTTATCAAGTGGCAAATTAGATGATTCACATTCAATGGCTTCCACAAGCCGTCAAAAATCCACAGTCCAAGGTGGTGGCTTGAAAGATGATGTTGACAAAGCTTGGAAAATGATGTGTAGGGCAAAGACGATGCAACGGACTCCTAGAAGAACAAGCAGAATTCAACAGGAAGTGGATGATGGTCCCTCATGTAGTGGTGCTAGAGAAAAATCACTTGCACCTCGTAGTTGCCCAGATTCAATAAAACAACAGCCCAGAACATTAGACTTTAGGTACAGAATGCAGGAGAAGTGCGAATATTCTAGTCTCAAAAGAAAATTGGAAAATCACGGGTCTCCGATGTTGGGAGAGAAAAGGCAAAGTAGGGTCACATGTGAGGAGATGCTACAACATTCGAGGGACCATACTACTCATTCAGAAGGATACAGGGAACGGCCATTGCCCAAAAAGATCCATAGTAGTACCCACGGTGCTCCCTGTCACGGAGAAAGAAATGCTGCGAAGGAACAAAGGCAGTCTGCTTACTTGGTAACTTCAGTAGGTTCAGCACCCTCTAGTGGAAAACCTGGCAGTGTGTTCACTTCTTATAAGGATGTGGATATTTTCAATAAAGAAAAGAGGTTTGCTAAAAGCGTTGGGACTGGAATCTCGAAAAATACTGAAGATGCAAAAACAGAGATCCAGTCTCTTGTTAAACTGAATCTGAAATGCTTTGCTAGACATAAACAATTAGGTGTTGAAACCTTCAAGGTAGTTGCAAGGCAAGCCACTCATACCATCTTAGCTGCTTGCCATTCTGAGCAGCAAAAGTCTAATTTATACTCCTCAAGCTCGGTATGCAGCCATACTGACCATATTCTGCAGCTTCGGAAGTCTTCTTTAATGCCCAATTGTTGCCAACAGTGCTTTCATGTCTTTGTAAACAATGTTGTCAAGTCCGTCATGTTGGAAAAAGTGGGTTGTTGTTCTTGA 1827 0.4209 MSTSLPTSNKRPKSEVKTEEEEEEDNDNNQDDCCGICYIERGISVPAEIDCCNHYFCFVCIMEWAKHESRCPLCRQRFSNVRRLPKHGIFTSSRDVKVPLRDQVYHPHGNMTSGPVDSNAELNCSICDGAKEENLILICDLCDTASHTFCVGLGYTVPEGDWFCHDCAVSLETNANYMLEQQNVELKAEPGVTTLNIVRGTSSQVIRRPMASPLQQNNSLSSEIPLLDRVSRSEGKKPVSEVQRALRNVQLLRENWNSLRSGKLRFHSKSFQSGGTSSQKENSSSLSSGKLDDSHSMASTSRQKSTVQGGGLKDDVDKAWKMMCRAKTMQRTPRRTSRIQQEVDDGPSCSGAREKSLAPRSCPDSIKQQPRTLDFRYRMQEKCEYSSLKRKLENHGSPMLGEKRQSRVTCEEMLQHSRDHTTHSEGYRERPLPKKIHSSTHGAPCHGERNAAKEQRQSAYLVTSVGSAPSSGKPGSVFTSYKDVDIFNKEKRFAKSVGTGISKNTEDAKTEIQSLVKLNLKCFARHKQLGVETFKVVARQATHTILAACHSEQQKSNLYSSSSVCSHTDHILQLRKSSLMPNCCQQCFHVFVNNVVKSVMLEKVGCCS* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4369 608 SUPERFAMILY RING/U-box 25 87 - -
Mal5g4369 608 MobiDBLite consensus disorder prediction 267 314 - -
Mal5g4369 608 Pfam PHD-finger 124 168 IPR019787 -
Mal5g4369 608 SUPERFAMILY FYVE/PHD zinc finger 112 169 IPR011011 -
Mal5g4369 608 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 178 IPR013083 -
Mal5g4369 608 SMART PHD_3 123 168 IPR001965 -
Mal5g4369 608 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Mal5g4369 608 MobiDBLite consensus disorder prediction 267 308 - -
Mal5g4369 608 SMART ring_2 34 74 IPR001841 -
Mal5g4369 608 Pfam Ring finger domain 33 75 IPR001841 -
Mal5g4369 608 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 84 IPR013083 -
Mal5g4369 608 PANTHER 2X PHD DOMAIN CONTAINING PROTEIN-LIKE 9 605 - -
Mal5g4369 608 MobiDBLite consensus disorder prediction 434 457 - -
Mal5g4369 608 PANTHER F18C1.6 PROTEIN 9 605 - -
Mal5g4369 608 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Mal5g4369 608 MobiDBLite consensus disorder prediction 327 367 - -
Mal5g4369 608 ProSiteProfiles Zinc finger PHD-type profile. 121 170 IPR019787 -
Mal5g4369 608 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4369 Mal-Chr5 115084461 115088807 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4369 17 78 C3H Transcription Factor Family AT5G19430 35.938 2.13e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal5g4369 PHD 6.3e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4369 - - gmx:100808541 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4369 5 115084461 115088807 Mal5g4369 5 115084461 115088807 ECH