LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g4357	ATGGGGAGGGGAAGAGTGCAGTTGAAAAGGATTGAGAACAAGATCAATAGACAAGTCACTTTTTCAAAGAGAAGGTCTGGTTTGTTGAAGAAAGCTAAAGAGATCTCTGTGCTTTGTGATGCTGAAGTTGCTCTCATCATTTTCTCTACTAAAGGCAAGCTTTTTGAATACTCCAGCGATCCTTGTATGGAAAGAATTCTTGAACGATATGAGAGATATTCATATACGGAGAGGCAGCTTGTTACAAGGGATCAATCACCAAATGAAAACTGGGTTCTAGAACACGCAAAAATCAAGGCTAGGATGGAAGTACTTCAGAGAAATCAAAGGAATTTTATGGGAGAGGATTTGGACGGTTTAAGTCTCAAAGAGCTTCAGAATTTGGAACAACAACTTGATTTCGCTCTCAAACAAATTAGATCCCGGAAGAACCAAGTCATGTATGAATCTATATCAGAACTTCAGAAAAAGGATAAGGCACTCCAGGAACATAACAACTTGCTCTCCAAGAAGATAAAGGAAAAGGAGAAGGAACTTGCTCAAGAAGAGCTGCAAAATAGTGTGGAGGTGACTCCCATTGAAACTGCAGGAGGGTCCCTACAAGCAAATTGCAACGAAGAAACAGCAGCACAAACTCGAGGTAGCCCCAGTCTTCCGGCATGGATGATTCGTCCTATAAATGAATAG	687	0.409	MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAKEISVLCDAEVALIIFSTKGKLFEYSSDPCMERILERYERYSYTERQLVTRDQSPNENWVLEHAKIKARMEVLQRNQRNFMGEDLDGLSLKELQNLEQQLDFALKQIRSRKNQVMYESISELQKKDKALQEHNNLLSKKIKEKEKELAQEELQNSVEVTPIETAGGSLQANCNEETAAQTRGSPSLPAWMIRPINE*	229

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g4357	228	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Mal5g4357	228	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Mal5g4357	228	Gene3D	-	13	86	IPR036879	GO:0003677\|GO:0046983
	Mal5g4357	228	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Mal5g4357	228	Coils	Coil	158	190	-	-
	Mal5g4357	228	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG	1	183	-	-
	Mal5g4357	228	Pfam	K-box region	84	172	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Mal5g4357	228	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Mal5g4357	228	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Mal5g4357	228	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Mal5g4357	228	ProSiteProfiles	K-box domain profile.	88	178	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Mal5g4357	228	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	183	-	-
	Mal5g4357	228	CDD	MADS_MEF2_like	2	75	IPR033896	GO:0000977\|GO:0045944
	Mal5g4357	228	Coils	Coil	223	228	-	-
	Mal5g4357	228	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Mal5g4357	228	SUPERFAMILY	SRF-like	2	92	IPR036879	GO:0003677\|GO:0046983
	Mal5g4357	228	Coils	Coil	125	145	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g4357	Mal-Chr5	114891335	114897171	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g4357	1	192	MADS-box Gene Family	AT1G26310	64.322	7.78e-88	258

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Mal5g4357		K-box	3.6e-29	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g4357	K09264		-	gmx:100805348	320.857

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal6g4475	6	127808770	127812865	Mal5g4357	5	114891335	114897171	ECH
	Mal5g4357	5	114891335	114897171	Mal5g4357	5	114891335	114897171	ECH