Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4355 ATGGGAAGAGGTAGAGTTGAACTAAAGAGAATAGAGAACAAAATTAATAGACAAGTCACTTTTGCAAAGAGAAGAAATGGTGTACTCAAGAAGGCTTATGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCCCTTATCATCTTCTCCAACCGTGGCAAACTCTATGAATTCAGCAGCACCTCTTGCATGATGAAAACATTGGAGAAATACCACAAGTACAGTTACAGTGAACTGGAGACCAACCGACCGGCCAATGATACTCTGAATTACCAGGAATATGTGAGATTAAAAGCAAATGTAGAAATCTTACAACGTTCACAAAGGAACCTTCTTGGGGAAGATATTGCACAAATGAACACAAGTGAGCTCGGGCAACTTGAAAATCAATTGGAAGCAGCACTTAAGAATATAAGATCAACAAAGACTCAGTTCATGCTTGATCAACTCACTAATCTTCAGATTCGGGAAACAGTACTTGCTGAAACAAATAATGAGCTAAGGAGTAAGTTGGAAGAAACCGATAACTCACGAGTTCAAGGTACAATGTTGGCTTTGGAAGCATGTGAGTCTAATATCCATTACACACGCTTTCCTCCTCCTCCTCCTCAATCTGAGAGGTTTTTCCACCATGTGGGAGTGAATTCCAACTTGCAAATTGGATACAATCCGATGGGTTCTGATGATGCAAACGTTGGAGCTTCATCCTTAAGTATGAATGGATTCGCCTCTATGACGTGGATGCTCTGA 747 0.4056 MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSCMMKTLEKYHKYSYSELETNRPANDTLNYQEYVRLKANVEILQRSQRNLLGEDIAQMNTSELGQLENQLEAALKNIRSTKTQFMLDQLTNLQIRETVLAETNNELRSKLEETDNSRVQGTMLALEACESNIHYTRFPPPPPQSERFFHHVGVNSNLQIGYNPMGSDDANVGASSLSMNGFASMTWML* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4355 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mal5g4355 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal5g4355 248 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Mal5g4355 248 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Mal5g4355 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 235 - -
Mal5g4355 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal5g4355 248 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Mal5g4355 248 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 235 - -
Mal5g4355 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal5g4355 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal5g4355 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal5g4355 248 Coils Coil 116 143 - -
Mal5g4355 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mal5g4355 248 Pfam K-box region 89 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal5g4355 248 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4355 Mal-Chr5 114859241 114866213 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4355 1 220 MADS-box Gene Family AT5G15800 57.207 6.87e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal5g4355 K-box 7.9e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4355 5 114859241 114866213 Mal5g4355 5 114859241 114866213 ECH