Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4354 ATGGAATCTTGGAGTTATATTTCTGAAGAAAAAGGTTATGTCTCTAATGAGAATCAAGGTTCTGAAGAAATGGGTTTTAGTGAAATGTTTGGGAAACAATATTCAGATGATTTCAATTTCATTGGAAGTGTTCCAAGTAGGAAACTTGATGGTAAATTTTGTGACCCAAATGGGTTTTTTGAAAAAAGGGACACAAATTCTAAGCTTTCAAATTCTGTGGTGGAGTCCAATGGTTGGGATTCTCTCATTGATTTGAAGCTAGGAAGATTTGGTGATCATGGAGATGATGGTATTGGTGTGGGATTTTCTAAAGGAGCAGCACCTATTTTATCTTCTTGTGAATCATCAACACCTCCCAAGAGAGTGAGAGTGAACTCAATGAATGCATATTGTCAAGTTTATGGTTGTAACAAGGATCTTAGTTCTTGTAAAGATTACCACAAGAGGCATAAAGTTTGTGAGGTTCATTCCAAGACTTCTACAGTCATAGTGAATGGAATTGAACAGAGGTTTTGTCAACAATGTAGTAGGTTTCATCTGCTGTCTGAATTTGATGATGGTAAGCGCAGTTGCCGTAAACGACTTGCAGGCCATAATGAGCGTCGAAGAAAACCACAAGTAGGCGTTCACTCTGCAAATTCCAGGAGATTGTTTCAGCCATGTGGTGATATCAGATTCCACGGAACCAAGCCAACACCAGCTTCTTTTCTCTGCCCAGAGATCTTCCAAAGTGGTTTTTGGAGACCTATGAAAGCAGAACATGAAGCTGGCTTTAGGCATCTCTCTTCTGTGCCTGTTACCAATGGACATCCTCAATCAAGATCTTCGTTTCCTTCATACAATGAAAAACAATTTCCCTTTCTTCATGAAAATGTTTCCACATCCACTACAAGCAGTATGTTCAGTGAAAACAATAGCCATTATGCGCATGCCATTGGCCACACCACATTAGGAAGTGAAGACTTCAATGTTTTTCAAACATCACCAAGCATTCGAGGATTATCCGGAAATTCAGACTCTTGTGCTCTCTCTCTTCTGTCAGCTCAATCCAATAACACTTCAAGCCAATCCTCGGTAATTCCCTTTGATAACCCTTTGGTTATTCCAAGCAGCCATAGCCATCTTTACAGCATAAGATCACAGACAACTTCCTCAAGCCAAATGTCTGATAGATTTCTATCAGAATTAAATCCTGCATATGGAAGTCATCTCAGTCCTATAGTGGTATCAGACAATAACGATATTGTGAACTTTGAAATGGAAGATGGGATCTTCCAAGATTCAGATTTTATGAATGCTAAAGATCGTCTTTCGTGTGAAGATGATGCAACCATTGACTTACTACAATTGTCGTCGCAGCTTCAGCGAGTTGAGCATCAGAGAAAATCTTTGCAGGTGAAGAAAGAGAGTGATTCTTCTTGCATTCTCCGGATTACTTAA 1440 0.3937 MESWSYISEEKGYVSNENQGSEEMGFSEMFGKQYSDDFNFIGSVPSRKLDGKFCDPNGFFEKRDTNSKLSNSVVESNGWDSLIDLKLGRFGDHGDDGIGVGFSKGAAPILSSCESSTPPKRVRVNSMNAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTSTVIVNGIEQRFCQQCSRFHLLSEFDDGKRSCRKRLAGHNERRRKPQVGVHSANSRRLFQPCGDIRFHGTKPTPASFLCPEIFQSGFWRPMKAEHEAGFRHLSSVPVTNGHPQSRSSFPSYNEKQFPFLHENVSTSTTSSMFSENNSHYAHAIGHTTLGSEDFNVFQTSPSIRGLSGNSDSCALSLLSAQSNNTSSQSSVIPFDNPLVIPSSHSHLYSIRSQTTSSSQMSDRFLSELNPAYGSHLSPIVVSDNNDIVNFEMEDGIFQDSDFMNAKDRLSCEDDATIDLLQLSSQLQRVEHQRKSLQVKKESDSSCILRIT* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4354 479 Coils Coil 447 467 - -
Mal5g4354 479 Gene3D - 123 192 IPR036893 GO:0003677|GO:0005634
Mal5g4354 479 Pfam SBP domain 131 204 IPR004333 GO:0003677
Mal5g4354 479 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 479 IPR044817 GO:0003677
Mal5g4354 479 ProSiteProfiles Zinc finger SBP-type profile. 128 205 IPR004333 GO:0003677
Mal5g4354 479 PANTHER 1 PROTEIN, PUTATIVE-RELATED 15 479 - -
Mal5g4354 479 SUPERFAMILY SBT domain 129 209 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4354 Mal-Chr5 114839775 114842372 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4354 83 461 SBP-box Gene Family AT1G69170 37.306 4.12e-48 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mal5g4354 SBP 2.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4354 - - gmx:100817547 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4354 5 114839775 114842372 Mal5g4354 5 114839775 114842372 ECH