Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4346 ATGAACGGGCTAAGAGGCGAAAGAGCACCTCTCTTGGAGGCTGAACGCGGTGGTGGTCGAAGGGGAAAGACACGCGATGATTCCACGGCAGATCAAGTCTCAGACCTTGAACATGGTGATGGAGTACCGGCTGCACATGTGGGATTCTTTAGAGTTTTTTCACTTGCAAAGCCTGAGGCTGGAAAATTGGTCATTGCTACGGTAGCTCTGTTAATTGCGGCCACATCAAGTACCTTAGTTCAAAAATTTGGTGGGAAGATAATTGACATTGTCTCAGGGGATATCAGAACTCCTGAAGAGAAAGATGCAGCATTAGAGGCTGTCAAGAACACCATACTCGAAATCTTTCTCATTGTTGTGCTCGGTTCAGTTTGCTCGGCACTTCGAGCCTGGCTTTTTTATTCTGCTAGCGAAAGGGTTGTTGCACGGCTGAGGAAGAATTTGTTCACTCACCTTGTAAACCAGGAAATAGCTTTCTTTGATGTTACTCGAACCGGGGAACTTTTAAGTAGGCTATCTGAAGATACACAGATCATTAAGAATGCTGCAACTACCAACCTCTCAGAGGCCTTGAGAAACTTGTCAACTGCATTTATTGGTCTCAGCTTCATGTTTGCAACATCATGGAAGTTAACATTATTGGCTTTGGCTGTTGTACCTGTTATTTCTGTCGCTGTTCGTCAATTTGGTCGTTTCCTACGTGAACTCTCTCATAAAACTCAAGCTGCAGCTGCAGTATCTTCTTCAATTGCTGAGGAAACCTTTGGTGCAATAAGAACAGTTAGATCTTTTGCTCAGGAAGATTATGAAATAGAACGCTACTCCGAGAAAGTTAATGAGACTCGATCGCTTGGACTTAAGCAAGCTAAAGTTGTTGGACTCTTCTCTGGAGGTCTTAATGCAGCATCTACACTTTCAGTTATTGTTGTTGTTATATATGGAGCTAATTTGACGATCAAGGGTTCAATGACCTCGGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCAGTTGGATCTTCTATATCTGGTTTGTCGGGATTGTATTCTTCAGTTATGAAAGCCGCCGGTGCTAGCAGAAGGGTATTTCAACTGTTGGATCGTGCCTCATCCATGCCTAAGGCCGGAGATAAATGTCCTCTGGGTGATCATGATGGGGAGGTTGAACTAGATGATGTATGGTTTTCCTATCCATCACGCCCTAATCATATGGTGCTCAAGGGTATTAATATAAAACTGCAACCTGGCTCAAAGGTTGCTCTTGTTGGTCCAAGCGGAGGCGGAAAGACTACAATTGCAAACTTAATTGAAAGATTTTATGACCCAACCAAGGGAAAGATTCTGGTGAATGGTGTTCCTCTAGTAGAAATATCACACAAACATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACCCTCTTCAATTGTTCCATAGAGGAGAATATAGCTTATGGATTTGATGGCAAAATTGACGACGCTGATATTGAAAATGCTGCCAAAATGGCCAATGCGCATGAATTTATATCAAATTTCCCAGAAAAATACAAGACCTTTGTTGGAGAGCGAGGCATAAGGCTTTCAGGAGGACAGAAACAGAGAATAGCAATTGCTAGAGCCTTGCTTATGAACCCAAAAATCCTCTTACTGGATGAAGCCACCAGCGCCTTAGATGCTGAAAGCGAGTACTTGGTACAGGATGCTATGGATTCTATCATGAAGGGAAGGACAGTTCTAGTCATTGCTCATAGGTTATCAACTGTTAAAACTGCTAATACTGTTGCAGTTGTTTCTGATGGTCAAATAGTTGAGAGTGGCACTCATGACGAGCTTCTCGACAAGAATGGTGTTTATACTGCATTAGTCAAGAGACAACTACAGACAACAAAAACAGAAATCTAA 1905 0.4241 MNGLRGERAPLLEAERGGGRRGKTRDDSTADQVSDLEHGDGVPAAHVGFFRVFSLAKPEAGKLVIATVALLIAATSSTLVQKFGGKIIDIVSGDIRTPEEKDAALEAVKNTILEIFLIVVLGSVCSALRAWLFYSASERVVARLRKNLFTHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLSFMFATSWKLTLLALAVVPVISVAVRQFGRFLRELSHKTQAAAAVSSSIAEETFGAIRTVRSFAQEDYEIERYSEKVNETRSLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIKGSMTSGDLTSFILYSLSVGSSISGLSGLYSSVMKAAGASRRVFQLLDRASSMPKAGDKCPLGDHDGEVELDDVWFSYPSRPNHMVLKGINIKLQPGSKVALVGPSGGGKTTIANLIERFYDPTKGKILVNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKIDDADIENAAKMANAHEFISNFPEKYKTFVGERGIRLSGGQKQRIAIARALLMNPKILLLDEATSALDAESEYLVQDAMDSIMKGRTVLVIAHRLSTVKTANTVAVVSDGQIVESGTHDELLDKNGVYTALVKRQLQTTKTEI* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4346 634 CDD ABC_6TM_AtABCB27_like 66 362 - -
Mal5g4346 634 Gene3D ABC transporter type 1, transmembrane domain 115 385 IPR036640 GO:0005524|GO:0016021
Mal5g4346 634 Gene3D - 386 631 IPR027417 -
Mal5g4346 634 Pfam ABC transporter transmembrane region 63 336 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal5g4346 634 ProSitePatterns ABC transporters family signature. 528 542 IPR017871 GO:0005524
Mal5g4346 634 SUPERFAMILY ABC transporter transmembrane region 51 368 IPR036640 GO:0005524|GO:0016021
Mal5g4346 634 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 388 625 IPR003439 GO:0005524
Mal5g4346 634 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 626 IPR027417 -
Mal5g4346 634 Pfam ABC transporter 406 556 IPR003439 GO:0005524
Mal5g4346 634 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 3 630 IPR039421 -
Mal5g4346 634 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 64 354 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal5g4346 634 PIRSF ABC_prm/ATPase_B 19 634 - -
Mal5g4346 634 MobiDBLite consensus disorder prediction 9 34 - -
Mal5g4346 634 MobiDBLite consensus disorder prediction 1 39 - -
Mal5g4346 634 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 3 630 - -
Mal5g4346 634 CDD ABC_MTABC3_MDL1_MDL2 388 626 - -
Mal5g4346 634 SMART AAA_5 415 609 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4346 Mal-Chr5 114666322 114670797 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4346 49 634 Calmodulin-binding Proteins AT2G36910 33.725 4.70e-94 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4346 - - var:108320153 1050.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4346 5 114666322 114670797 Mal5g4346 5 114666322 114670797 ECH